PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G09380.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 566aa    MW: 61713.1 Da    PI: 6.4673
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G09380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.4e-30245301259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       Dg+nWrKYGqK+vk+se++rsYYrCt ++C +kkkve++  d++vvei+Y+g+Hnhe
  ONIVA08G09380.1 245 GDGFNWRKYGQKQVKSSENSRSYYRCTNSNCLAKKKVEHCP-DGRVVEIIYRGTHNHE 301
                      6****************************************.***************8 PP
2WRKY100.41.1e-31412469259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++ +d + +++tYeg+Hnh+
  ONIVA08G09380.1 412 SDGYRWRKYGQKIVKGNPNPRSYYRCTHDGCPVRKHVEKAPDDDNNIVVTYEGKHNHD 469
                      7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-26237303IPR003657WRKY domain
PROSITE profilePS5081121.746239303IPR003657WRKY domain
SuperFamilySSF1182907.72E-24239303IPR003657WRKY domain
SMARTSM007749.4E-33244302IPR003657WRKY domain
PfamPF031061.0E-22246301IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.6E-31405471IPR003657WRKY domain
PROSITE profilePS5081132.799406471IPR003657WRKY domain
SuperFamilySSF1182901.7E-27406471IPR003657WRKY domain
SMARTSM007742.0E-36411470IPR003657WRKY domain
PfamPF031064.3E-26413469IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MPDGYPAAPP GMERPAPEAA AAAAEPPGAK AEEEEEGPKD VGVKGTGKEK ETEKVEAEKE  60
MEGKGKGKES MEVEEEGKEK EAKGKESMEV EEGKEKEGKG KAKEKEKETK VKVKEEGGEE  120
KEKGKVEVVE AKRRPAGVGA ETPILAVPMV AVPCFLASPA FAGHFSMSHQ AALASVTAQA  180
QIQLQSPTTP YSEGLPSPFP ITPKAVMPLQ RSPSGTEGSV RRSVLEKSAS FQSRPHNHVS  240
VNMVGDGFNW RKYGQKQVKS SENSRSYYRC TNSNCLAKKK VEHCPDGRVV EIIYRGTHNH  300
EPPQKTRFVK ERVAHITASS GDDETLRLVN NEIIESPSPG CKLEPGAVSE ASEQQLFCSS  360
DCEGDAGNKS EDDHPSTEPQ PKRRIIETST PLTPVLRTVR EQKIIVQAGK TSDGYRWRKY  420
GQKIVKGNPN PRSYYRCTHD GCPVRKHVEK APDDDNNIVV TYEGKHNHDQ PFRNNSESKD  480
GPVPMIIPAE TTSEQPSTMT STSEQKQPIS LLKDGGDEPM KGKTSEIGGE KAVESAQTLI  540
SIKTNPDDMK NTLLKDTSAV VPVQNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-254134711977Probable WRKY transcription factor 4
2lex_A2e-254134711977Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981860.0DQ298186.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 82 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650463.10.0probable WRKY transcription factor 32 isoform X2
TrEMBLA0A0E0I9K30.0A0A0E0I9K3_ORYNI; Uncharacterized protein
STRINGONIVA08G09380.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.17e-65WRKY DNA-binding protein 4