PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G08030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WOX | ||||||||
Protein Properties | Length: 284aa MW: 30183.6 Da PI: 7.0097 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.6 | 1.4e-15 | 41 | 101 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e +++ + l + +++V++WFqNrR + ++ ONIVA08G08030.1 41 RSRWAPKPEQILILESIFNSgMVNPAKDETARIRRLLerfgAVRDANVFYWFQNRRSRSRR 101 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 104.7 | 6e-34 | 40 | 102 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++ ONIVA08G08030.1 40 ARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRR 102 689**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.64E-13 | 37 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.677 | 37 | 102 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.9E-6 | 39 | 106 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-8 | 40 | 101 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.4E-13 | 41 | 101 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.20.5.600 | 2.2E-4 | 102 | 138 | IPR012897 | Potassium channel, voltage dependent, Kv1.4, tandem inactivation domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0071805 | Biological Process | potassium ion transmembrane transport | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005249 | Molecular Function | voltage-gated potassium channel activity | ||||
GO:0030955 | Molecular Function | potassium ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MDRTATASWE VMSRRGEQQQ QLMMQAPASH NGGSGGGEPA RSRWAPKPEQ ILILESIFNS 60 GMVNPAKDET ARIRRLLERF GAVRDANVFY WFQNRRSRSR RRARQLQQAC GAALHQLPSA 120 AAAAGAGGGG GYYHHHHQPS SSPFLMHGGG GGGVVTSTTA APAVAASGHF LADEVDGGGD 180 DDLFAISRQM GLMARHGGGD HHYGSYADSD ATQLSYQPTG TIQVFINGVA YDVPSGGALD 240 MAGTFGRDAM LVHSSGEVLP VDEHGVLINS LQMGECYYLV SKSI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107305 | 0.0 | AK107305.1 Oryza sativa Japonica Group cDNA clone:002-126-D01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649642.1 | 0.0 | WUSCHEL-related homeobox 10 | ||||
Swissprot | A2YST1 | 0.0 | WOX10_ORYSI; WUSCHEL-related homeobox 10 | ||||
TrEMBL | A0A0E0I918 | 0.0 | A0A0E0I918_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA08G08030.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1078 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 5e-33 | WUSCHEL related homeobox 12 |