PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G07720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 59aa MW: 6540.49 Da PI: 3.9711 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3.1e-09 | 21 | 57 | 3 | 41 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 +WT +E +ll++a l + W Ia+++ ++t qc ONIVA08G07720.1 21 SWTDQETLLLLEALVILQAK-WGDIAEHVD-TKTKAQCM 57 7*******************.*********.*******6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 14.236 | 17 | 59 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 1.79E-9 | 17 | 57 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-6 | 20 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.7E-8 | 21 | 57 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 59 aa Download sequence Send to blast |
MSQTDFIIME SAEIPGFGGT SWTDQETLLL LEALVILQAK WGDIAEHVDT KTKAQCMLN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012617 | 6e-96 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633471.1 | 9e-24 | SWI/SNF complex subunit SWI3D isoform X2 | ||||
Swissprot | Q8VY05 | 8e-12 | SWI3D_ARATH; SWI/SNF complex subunit SWI3D | ||||
TrEMBL | A0A0E0I8X5 | 3e-35 | A0A0E0I8X5_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA08G07720.1 | 5e-36 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP21939 | 4 | 4 |