PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G04680.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 418aa MW: 42580.6 Da PI: 6.5503 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.7 | 0.00023 | 301 | 340 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ ++ L++l+ + +K + a++L +++eYIk L ONIVA08G04680.2 301 KVRKEKLGDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 340 556667777777888888887.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-12 | 290 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.351 | 291 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.00E-5 | 294 | 344 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.2E-9 | 296 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-4 | 297 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MADHQEMIHA AAAPVMYSGG GAAAGGATTT TGSHGGGGGD WWSAAVSSCS APAPETMQGF 60 GGWSAAVVAV DGGGNTSRSA AGNTASSESP GSLATGSSIT FQEPAGGVAD PAAIAVHAQT 120 VAGGGGGGWN QQPFLDGSGF HGYMSSSRND HHTNHHHHQI NTPSLMSNSS SNNGVMLQEH 180 QHDQNYQFLS NLGFELLSSP TSPYGGGGGF RSSLLRSLTE PAAAAKPNDS PGFQQYHHHQ 240 PAMNLQPPAA AAGREPLQFT NSTAAPFWNP SSGFTVAAEG TALGGAGASP AQPTPASLAA 300 KVRKEKLGDR VTALQQLVSP FGKTDTASVL HETIEYIKFL HDQVGALSAP YLKNRQQVPH 360 LKNSTGVDND GGGGGEATAA SKRDLTGRGL CLVPISSTFA VASETPVDFW TPFGAAFR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004590 | 0.0 | AP004590.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0577G06. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648821.1 | 0.0 | transcription factor bHLH112 isoform X2 | ||||
TrEMBL | A0A0E0I7U6 | 0.0 | A0A0E0I7U6_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA08G04680.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 7e-37 | bHLH family protein |