PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G04680.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 418aa    MW: 42580.6 Da    PI: 6.5503
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G04680.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.000233013401054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + R +++ ++   L++l+ +      +K + a++L +++eYIk L
  ONIVA08G04680.2 301 KVRKEKLGDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 340
                      556667777777888888887.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-12290360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.351291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-5294344No hitNo description
Gene3DG3DSA:4.10.280.109.2E-9296362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-4297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MADHQEMIHA AAAPVMYSGG GAAAGGATTT TGSHGGGGGD WWSAAVSSCS APAPETMQGF  60
GGWSAAVVAV DGGGNTSRSA AGNTASSESP GSLATGSSIT FQEPAGGVAD PAAIAVHAQT  120
VAGGGGGGWN QQPFLDGSGF HGYMSSSRND HHTNHHHHQI NTPSLMSNSS SNNGVMLQEH  180
QHDQNYQFLS NLGFELLSSP TSPYGGGGGF RSSLLRSLTE PAAAAKPNDS PGFQQYHHHQ  240
PAMNLQPPAA AAGREPLQFT NSTAAPFWNP SSGFTVAAEG TALGGAGASP AQPTPASLAA  300
KVRKEKLGDR VTALQQLVSP FGKTDTASVL HETIEYIKFL HDQVGALSAP YLKNRQQVPH  360
LKNSTGVDND GGGGGEATAA SKRDLTGRGL CLVPISSTFA VASETPVDFW TPFGAAFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045900.0AP004590.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0577G06.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648821.10.0transcription factor bHLH112 isoform X2
TrEMBLA0A0E0I7U60.0A0A0E0I7U6_ORYNI; Uncharacterized protein
STRINGONIVA08G04680.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.17e-37bHLH family protein