PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G04140.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 273aa    MW: 29540.8 Da    PI: 6.6917
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G04140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.3e-1177133155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++ k++g+++A+++d  s+  g krk  + g++ t+e Aa+a++ a++k++g
  ONIVA08G04140.1  77 SRYHGVTRLKWSGKFEAHLWDnSSQvEGrKRKGKH-GSYVTEENAARAHDLAALKYWG 133
                      79*******************55558777778888.999999**************98 PP
2AP250.16.7e-16178232156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      s y+GV+++k +grW A+I    e +    k ++lg+f t+ eAa+a++ a+ +l+g+
  ONIVA08G04140.1 178 SSYRGVTRRK-DGRWQARIGRIGEsR--DtKDIYLGTFETEIEAAEAYDLAAIELRGA 232
                      67*****999.9******99953323..36**********99*************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.49E-1177145No hitNo description
PfamPF008472.9E-877133IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-1177144IPR016177DNA-binding domain
PROSITE profilePS5103215.79178143IPR001471AP2/ERF domain
SMARTSM003801.6E-1378149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1078144IPR001471AP2/ERF domain
PfamPF008471.3E-11178231IPR001471AP2/ERF domain
CDDcd000184.40E-20178241No hitNo description
SuperFamilySSF541712.29E-17178241IPR016177DNA-binding domain
SMARTSM003803.8E-25179245IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-19179239IPR001471AP2/ERF domain
PROSITE profilePS5103218.518179239IPR001471AP2/ERF domain
PRINTSPR003674.0E-8180191IPR001471AP2/ERF domain
PRINTSPR003674.0E-8221241IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MATVQPAASD PAPPPPPETE EQPAAAGGEE IAALDEQLAV ADGGGDDGKA AAAAEGGGGG  60
GKLVAETMRK YAAPRSSRYH GVTRLKWSGK FEAHLWDNSS QVEGRKRKGK HGSYVTEENA  120
ARAHDLAALK YWGAGPNTKL NFNVSDYEKE IERMKTMSQD EFVVYIRRQS SCFSRGTSSY  180
RGVTRRKDGR WQARIGRIGE SRDTKDIYLG TFETEIEAAE AYDLAAIELR GAHAVTNFDI  240
SNYCEDGLKK LEASSEVPKL LEGPSKAAKL AGR
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851180.0AY685118.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D9 (AP2D9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650903.11e-155AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ84Z021e-65CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0D3GWT00.0A0A0D3GWT0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0I7N40.0A0A0E0I7N4_ORYNI; Uncharacterized protein
TrEMBLA2YRN80.0A2YRN8_ORYSI; Uncharacterized protein
STRINGONIVA08G04140.10.0(Oryza nivara)
STRINGOBART08G04290.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-66AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]