PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G03630.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 355aa    MW: 36915.5 Da    PI: 7.5023
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G03630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.62.4e-32164217255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt++LH+rFv+ave LGG+++AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  ONIVA08G03630.1 164 PRMRWTSTLHARFVHAVELLGGHDRATPKSVLELMDVKDLTLAHVKSHLQMYRT 217
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.09E-16161218IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-29162218IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-24164217IPR006447Myb domain, plants
PfamPF002495.9E-7165216IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MELFPSQPDL SLQIGLPTGA AAAAHGHGLN ARFFAAAAGA GGHNPAMASS PPSSLQLPLP  60
MPLPLPLPMA PAGAGAGAGG LQFYPDAAAA MLRPIRGVPL YHHHQQQHAA AAPFVGAAPL  120
PHHPSSGGAC YCEPCHVAGA WRRGGCGGGG ARGVLPAKRA PRAPRMRWTS TLHARFVHAV  180
ELLGGHDRAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKN TERPAASSDQ ADGFENGSAG  240
EICDENSLDL HGGCRPEAMS AAATAAAAAR HGRLAACNDH GSSTGAHGAL WNSSSREDWS  300
GFHESNTGTM QTLKDMQSKS LEILSDMNSC VSETTSSTSE LNLEFTLGRP QNRPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-16165219357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16165219357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16165219357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16165219357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648943.10.0probable transcription factor RL9 isoform X1
SwissprotQ0J2352e-42ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLA0A0E0I7H20.0A0A0E0I7H2_ORYNI; Uncharacterized protein
STRINGONIVA08G03630.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.15e-38G2-like family protein