PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G03570.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LSD
Protein Properties Length: 215aa    MW: 22490.5 Da    PI: 7.9433
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G03570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.35.9e-1499123125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      C+gCr+lL+YP+GA+sV+Ca+C tV
  ONIVA08G03570.1  99 CSGCRNLLMYPAGATSVCCAVCSTV 123
                      ***********************99 PP

2zf-LSD1468.6e-15138162125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      CggC+tlL+Y rGA+sV+C++C+tV
  ONIVA08G03570.1 138 CGGCHTLLMYIRGATSVQCSCCHTV 162
                      ************************9 PP

3zf-LSD141.13e-13176200125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+Cr lL+Y +GA+sV+Ca+C++V
  ONIVA08G03570.1 176 CGNCRMLLMYQYGARSVKCAVCNFV 200
                      ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.9E-1396126IPR005735Zinc finger, LSD1-type
PfamPF069433.2E-1199123IPR005735Zinc finger, LSD1-type
SuperFamilySSF486954.08E-599197IPR011031Multihaem cytochrome
TIGRFAMsTIGR010531.6E-14135164IPR005735Zinc finger, LSD1-type
PfamPF069432.4E-12138162IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.3E-12173203IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-12176200IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MTSVKCTIPI PMLLMDYILS QAVVLVQKIL LMHLSAGFLS CRERKGDFSC LTAARICEAS  60
TSDAVVQAAG TAMPVPLAPY PTPPVPFTPP NGAQSQLVCS GCRNLLMYPA GATSVCCAVC  120
STVTAVPAPG TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLAMEANQ VAHVNCGNCR  180
MLLMYQYGAR SVKCAVCNFV TSVGASPGID QKPSS
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117590.0AK111759.1 Oryza sativa Japonica Group cDNA clone:J023055E16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648106.11e-126protein LSD1 isoform X3
RefseqXP_015648107.11e-126protein LSD1 isoform X3
SwissprotQ0J7V91e-132LSD1_ORYSJ; Protein LSD1
TrEMBLA0A0E0I7G41e-154A0A0E0I7G4_ORYNI; Uncharacterized protein
STRINGONIVA08G03570.11e-154(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.35e-60lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]