PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G03440.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 729aa    MW: 80627.7 Da    PI: 4.4019
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G03440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62.1e-5291421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp GfrFhPtdeelv +yLk k++g+  ++++vi+e+d++k+ePwdLp k  +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ +
  ONIVA08G03440.1   9 LPLGFRFHPTDEELVRHYLKGKITGQIRSEADVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVI 102
                      699************************9999****************96446677888************************************ PP

              NAM  93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       sk    k++++g+kktLvf++grapkge+t W+mheyr 
  ONIVA08G03440.1 103 RSKgdkkKQQVIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                      **988777777***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-593163IPR003441NAC domain
PROSITE profilePS5100557.5329163IPR003441NAC domain
PfamPF023651.4E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MTVMELKKLP LGFRFHPTDE ELVRHYLKGK ITGQIRSEAD VIPEIDVCKC EPWDLPDKSL  60
IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIRSKGDKKK QQVIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FRKQEEKIER PSPDEVDRSG  180
YSPTPSRSTP DNMEPIEDGN TPLNRESPES ALHESPIDLP ALTEAQAAPI TRWLADRTDN  240
ATTNEVNISH MPHHGLDGRA KASPSAGAFP QLIGSQQNIH DNNELATVSA PMLPHEDFNN  300
FPLGAIGNFD GNMNPRDPVE EFLNQTIADP DEHSSTTSKA QYDSDTGIIP TEFENHGVMQ  360
GEFMDDLSGL ENLDFWPDDR NPQLSALYED TPLLPYDSTD QDVLSMDSGA ESLQDLFNSM  420
DDSNARNNVW GNEPFLQGTG FPMSWPLQPN SAFPNQGTAN RRLMLQLSES LSPDFDASMT  480
RDECEDEEPG VVVTSKYVNE APEESTAEKD MPSDGDDAEP TGITILRRRH APTASSFSDG  540
DDAESTGITI LRQHQAPNAS LLSDGDDAES TGITILRRRQ APTASSASSF TQQGAAVQRV  600
RLQSNLDAAP CSSVDGSSSC IINEGESERT MEKPEIEENA GSTLAEGGTC HEDDQKEHDA  660
SAANAKSVLR LRKTAEGSDK ENKQEEEEGV LDSHVRAPGN KRGFPSYIIW LVLSVALVLL  720
ISLGIYGWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-45916420169NAC domain-containing protein 19
3swm_B4e-45916420169NAC domain-containing protein 19
3swm_C4e-45916420169NAC domain-containing protein 19
3swm_D4e-45916420169NAC domain-containing protein 19
3swp_A4e-45916420169NAC domain-containing protein 19
3swp_B4e-45916420169NAC domain-containing protein 19
3swp_C4e-45916420169NAC domain-containing protein 19
3swp_D4e-45916420169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8329680.0CT832968.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA203B11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650289.10.0NAC domain-containing protein 14 isoform X2
TrEMBLA0A0E0I7F10.0A0A0E0I7F1_ORYNI; Uncharacterized protein
STRINGONIVA08G03440.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.22e-69NAC 014