PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G02550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 26884.5 Da PI: 5.8206 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.6 | 6.1e-10 | 79 | 127 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ rE+ RRd++N++f eL + l + + K +Ka+iL A++ + +L ONIVA08G02550.1 79 TSKASREKIRRDKMNDRFLELGTTLEPG---KPVKSDKAAILSDATRMVIQL 127 67889**********************9...99*************988777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.14E-12 | 74 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.36 | 76 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.54E-8 | 77 | 130 | No hit | No description |
Pfam | PF00010 | 1.9E-7 | 80 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-12 | 80 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-8 | 82 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 0.00227 | 143 | 174 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSGTPADGGG GGSGDDWFLD CGILEDLPAA ACGAFPWDAS PSCSNPSVEV SSYVNTTSYV 60 LKEPGSNKRV RSGSCGRPTS KASREKIRRD KMNDRFLELG TTLEPGKPVK SDKAAILSDA 120 TRMVIQLRAE AKQLKDTNES LEDKIKELKA EKDELRDEKQ KLKVEKETLE QQVKILTATP 180 AYMPHPTLMP APYPQAPLAP FHHAQGQAAG QKLMMPFVGY PGYPMWQFMP PSEVDTSKDS 240 EACPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT830876 | 0.0 | CT830876.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103G20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649810.1 | 1e-175 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 2e-69 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A0E0I744 | 0.0 | A0A0E0I744_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2YR23 | 0.0 | A2YR23_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA08G02550.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2023 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 5e-72 | bHLH family protein |