PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G00590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 306aa MW: 32513.2 Da PI: 6.8869 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.2 | 1.6e-09 | 172 | 212 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++YIk L ONIVA08G00590.1 172 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 212 699*****************87.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.459 | 163 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-15 | 168 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-15 | 169 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 169 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-7 | 173 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.77E-6 | 186 | 217 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010500 | Biological Process | transmitting tissue development | ||||
GO:0048462 | Biological Process | carpel formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MDNMTHNSSS SSSWDLDMSL GSHHHPLLFD QPPPPPPPPP PPPLPFHLHH HPLDPSPSSS 60 LFPPPPHHHH HAHHLHHPLD LDQRRGHHDY GGGDQGGDEE LRLQQEAAAG GGGGGQDGGG 120 GGDQDADEEL GAMKEMMYRI AAMQPVDIDP ATIKKPRRRN VRISDDPQSV AARHRRERIS 180 ERIRILQRLV PGGTKMDTAS MLDEAIRYIK FLKRQVQELQ HQPGPPPPPY PAGAAPAAGP 240 STSAVGPPGR PFLPLGGGGP MIDWVGLTRP VDIHGPTSSS SSSSMGGALG FGFGGGGGGQ 300 SSHGMH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649611.1 | 0.0 | transcription factor HEC2 | ||||
TrEMBL | A0A0E0EGY3 | 0.0 | A0A0E0EGY3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0I6E2 | 0.0 | A0A0E0I6E2_ORYNI; Uncharacterized protein | ||||
STRING | OMERI08G00980.1 | 0.0 | (Oryza meridionalis) | ||||
STRING | ONIVA08G00590.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9051 | 32 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09750.1 | 2e-37 | bHLH family protein |