PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA07G26100.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 380aa MW: 40429.1 Da PI: 6.5921

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA07G26100.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.3	9e-10	175	222	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l ONIVA07G26100.1 175 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLF 222 9****************************************9888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-14	171	235	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.599	173	236	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.7E-8	175	229	No hit	No description
SuperFamily	SSF57959	1.05E-10	175	226	No hit	No description
Pfam	PF00170	1.8E-8	175	220	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.75E-22	176	225	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MAMPPKPGDQ PSPGRSPNPN LNLPCPLPPI PSCGGGGGGA GPTPPPPPPP PHHRRARSEV 60 AFRFPDDLGL GGGADGGGFD EIGSEDDLFS TFMDMEKIAG ADRDRAAETS SPPRPTKHRH 120 SASFDGFAFG AGAGGPGPGL GKQQDGAGGV FSEVMEAKKA MSSEQLAELA AIDPKRAKRI 180 LANRQSAARS KERKARYITE LERKVQTLQT EATTLSAQLT LFQRDTTGLS AENAELKIRL 240 QAMEQQAQLR DALNDALKQE VERLKIATGE MAKSNDAYNT GMQQVPYSPS FFQLSDQHAV 300 QHHAGVQQLP HQFQQPHPSV PSHQMLSHPN SLSDMMQQDS LGRLQGLDIG KGPVAVKNEA 360 EVVVKSEGSS ISAGESNSTF

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MAMPPKPGDQ PSPGRSPNPN LNLPCPLPPI PSCGGGGGGA GPTPPPPPPP PHHRRARSEV  60
AFRFPDDLGL GGGADGGGFD EIGSEDDLFS TFMDMEKIAG ADRDRAAETS SPPRPTKHRH  120
SASFDGFAFG AGAGGPGPGL GKQQDGAGGV FSEVMEAKKA MSSEQLAELA AIDPKRAKRI  180
LANRQSAARS KERKARYITE LERKVQTLQT EATTLSAQLT LFQRDTTGLS AENAELKIRL  240
QAMEQQAQLR DALNDALKQE VERLKIATGE MAKSNDAYNT GMQQVPYSPS FFQLSDQHAV  300
QHHAGVQQLP HQFQQPHPSV PSHQMLSHPN SLSDMMQQDS LGRLQGLDIG KGPVAVKNEA  360
EVVVKSEGSS ISAGESNSTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102562	0.0	AK102562.1 Oryza sativa Japonica Group cDNA clone:J033097I23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646776.1	0.0	transcription factor RF2b-like
Swissprot	Q6S4P4	1e-141	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A0E0I5Q6	0.0	A0A0E0I5Q6_ORYNI; Uncharacterized protein
STRING	ONIVA07G26100.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	3e-80	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]