PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G19920.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 143aa    MW: 15829.6 Da    PI: 10.1824
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G19920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.7e-092672543
                     -HHHHHHHHHHHHHTTTT.........-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding  5 TteEdellvdavkqlGgg.........tWktIartmgkgRtlkqcksr 43
                     T +Ed ++  + + +G+          +W+ Ia++++ gRt++++k++
  ONIVA07G19920.1 26 TDQEDRIICSLYNSMGSTyslrawtnrRWSIIASKLP-GRTDNDVKNH 72
                     899*************99*******************.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.406120IPR017930Myb domain
SuperFamilySSF466892.31E-16280IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-9229IPR009057Homeodomain-like
PROSITE profilePS500906.7021772IPR017877Myb-like domain
SMARTSM007170.00972176IPR001005SANT/Myb domain
PfamPF002493.4E-72572IPR001005SANT/Myb domain
CDDcd001671.01E-52570No hitNo description
Gene3DG3DSA:1.10.10.601.7E-113072IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MNRCGKSCRL RWLNYLHLGI KHSGYTDQED RIICSLYNSM GSTYSLRAWT NRRWSIIASK  60
LPGRTDNDVK NHHQPPPQQQ HHHHHHHNHR VTGGGARVTL VSPPPTPQSQ YASMQPSSAS  120
ASSSGGNACS FGAATMYSPS PST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-133724099B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269|PubMed:24563287}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126091e-77CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631660.13e-52transcription factor MYB4-like
SwissprotF4JSU02e-25MYB87_ARATH; Transcription factor MYB87
TrEMBLA0A0E0I3C81e-101A0A0E0I3C8_ORYNI; Uncharacterized protein
STRINGONIVA07G19920.11e-102(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.11e-25myb domain protein 87
Publications ? help Back to Top
  1. Fujiwara S, et al.
    Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis.
    Biotechnol. Lett., 2014. 36(5): p. 1049-57
    [PMID:24563287]