PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G19530.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 433aa    MW: 46630.9 Da    PI: 6.6673
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G19530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.7e-30171227259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK vkg e+p+sYY+Ct+ +C v+k+ve+sa d+++v+i+Y+g+H+he
  ONIVA07G19530.1 171 DDGYNWRKYGQKAVKGGEYPKSYYKCTHLNCLVRKNVEHSA-DGRIVQIIYRGQHTHE 227
                      8****************************************.***************8 PP
2WRKY103.21.4e-32339397159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gC vkk+vers e+p++v++tYeg+H h+
  ONIVA07G19530.1 339 LDDGYRWRKYGQKVVKGNPYPRSYYKCTYLGCDVKKQVERSVEEPNAVITTYEGKHIHD 397
                      59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-27165229IPR003657WRKY domain
SuperFamilySSF1182901.57E-24168229IPR003657WRKY domain
SMARTSM007742.5E-32170228IPR003657WRKY domain
PfamPF031061.2E-22171227IPR003657WRKY domain
PROSITE profilePS5081123.376171229IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-34326399IPR003657WRKY domain
SuperFamilySSF1182903.53E-29332399IPR003657WRKY domain
PROSITE profilePS5081134.762334399IPR003657WRKY domain
SMARTSM007742.3E-38339398IPR003657WRKY domain
PfamPF031064.2E-25340396IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MAAARRVAGG GGGSLWGPPQ PPPSTGGGIP QLPAAAAAPV EGLLDAPFSS SSGGGGGGWP  60
PYDLRMRCIL PVSMAPNPGN FETFPQQDLV PLTAQEVHSK CITFGRAENL SFIPLATSAL  120
VSQHTGSSSV NVTPLQEILT SPSQISNVNT ESIGVLQGLP ASSIVLDRPT DDGYNWRKYG  180
QKAVKGGEYP KSYYKCTHLN CLVRKNVEHS ADGRIVQIIY RGQHTHERPS KRRFKDCGGI  240
SDDLDDFSGT TGTSVRSQPD YDDYCRKPII PSGTMVAPLV KKIEDGDDQL SGSSDNQDEH  300
DDEVRTADGA SGDASANERN VPAPGQKIIV STTSEIDLLD DGYRWRKYGQ KVVKGNPYPR  360
SYYKCTYLGC DVKKQVERSV EEPNAVITTY EGKHIHDVPA ARNKSHVVAN ASLLQNTKSN  420
TYGTEQSYTT ITC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-34171400878Probable WRKY transcription factor 4
2lex_A4e-34171400878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418470.0AY341847.1 Oryza sativa (japonica cultivar-group) WRKY6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646950.20.0probable WRKY transcription factor 3
TrEMBLA0A0E0I3740.0A0A0E0I374_ORYNI; Uncharacterized protein
STRINGONIVA07G19530.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.13e-76WRKY DNA-binding protein 3