PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA07G19050.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 226aa MW: 23158.2 Da PI: 7.933

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA07G19050.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	90.5	2e-28	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe +r ++++sl+yeA r+ +Pv Gavg+++ ++++l+q ONIVA07G19050.1 2 SCNGCRVLRKGCSEGCVLRPCLqwidgAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRAAVFQSLLYEAAGRTINPVGGAVGLLSGGSWHLCQ 95 6*******************9999888999************************************************************ PP DUF260 90 lkaelal 96 ++++++l ONIVA07G19050.1 96 AAVDTVL 102 *999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.296	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-24	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MSCNGCRVLR KGCSEGCVLR PCLQWIDGAE AQGHATVFVA KFFGRAGLMS FLTAVPEPQR 60 AAVFQSLLYE AAGRTINPVG GAVGLLSGGS WHLCQAAVDT VLRGGGIQPL PDQVDAAAAG 120 GRDVFASTAR RAMGGCSTFS TAKRSTTTTT TKNPGTPHDA AAAAPQPEPS CDLGLWLSPG 180 SPPAPGDRRS GGRRADTPSM NSEGSVTTCG VVGGGEREPE LLNLFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069813	0.0	AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647207.1	1e-162	LOB domain-containing protein 37
Swissprot	Q9FN11	5e-67	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A0E0I318	1e-162	A0A0E0I318_ORYNI; Uncharacterized protein
TrEMBL	B8B806	1e-162	B8B806_ORYSI; Uncharacterized protein
STRING	ONIVA07G19050.1	1e-162	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	4e-57	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]