PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G18960.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 311aa    MW: 34329.7 Da    PI: 6.2337
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G18960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-102352751055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  ONIVA07G18960.1 235 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 275
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14226291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-12230286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-12234279No hitNo description
PfamPF000109.2E-8235275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAQFLGAHGD HCFTYEQMDE SMEAMAAMFL PGLDTDSNSS SGCLNYDVPP QCWPQHGHSS  60
SVTSFPDPAH SYGSFEFPVM DPFPIADLDA HCAIPYLTED LISPPHGNHP SARVEEATKV  120
VTPVATKRKS SAAMTVCPCK YLNRTVIYFS YHAVLFSMPN WIDELIQASK KSKKAGKKDP  180
IGSDEGGNTY IDTQSSSSCT SEEGNLEGNA KPSSKKMGTR ANRGAATDPQ SLYARKRRER  240
INERLRILQN LVPNGTKVDI STMLEEAVQY VKFLQLQIKL LSSDDMWMYA PIAYNGVNIS  300
NIDLNISSLQ K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646227.10.0transcription factor bHLH54
TrEMBLA0A0E0AM250.0A0A0E0AM25_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0I3070.0A0A0E0I307_ORYNI; Uncharacterized protein
STRINGOGLUM07G20330.10.0(Oryza glumipatula)
STRINGONIVA07G18960.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.11e-38root hair defective 6-like 4