PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA07G15940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 285aa MW: 31455.2 Da PI: 7.2491 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.2 | 9.1e-11 | 125 | 172 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRd++N++f eL +l + + +K++K++iL A++ + +L ONIVA07G15940.1 125 SKACREKVRRDKLNERFLELGAVLEPG---KTPKMDKSSILNDAIRVMAEL 172 6789**********************9...9**************998777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-14 | 112 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.41E-10 | 119 | 177 | No hit | No description |
PROSITE profile | PS50888 | 13.332 | 121 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-14 | 122 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-8 | 125 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-9 | 127 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MASPEGSTWV FDCPLMDDLA TAAGFDAAPA GGFYWTTPAP PQAALQPPPP QQQPVAPATA 60 APNACLVVLF FMYLLLYIIV TYGILKYKFI FFTSAEINGS VDCEHGKEQP TNKRPRSESG 120 TRPSSKACRE KVRRDKLNER FLELGAVLEP GKTPKMDKSS ILNDAIRVMA ELRSEAQKLK 180 ESNESLQEKI KELKAEKNEL RDEKQKLKAE KESLEQQIKF LNARPSFVPH PPVIPASAFT 240 APQGQAAGQK LMMPVIGYPG FPMWQFMPPS DVDTTDDTKS CPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068361 | 0.0 | AK068361.1 Oryza sativa Japonica Group cDNA clone:J013146F13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647705.1 | 1e-148 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 5e-74 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A0E0I1Z1 | 0.0 | A0A0E0I1Z1_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0Q9I1 | 0.0 | A0A0E0Q9I1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI07G18300.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA07G15940.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2023 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 2e-76 | bHLH family protein |