PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G11020.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 579aa    MW: 62040.3 Da    PI: 3.9565
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G11020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.82.9e-2581471128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dke 91 
                      lppG+rF+P d+elv++yL +++++++++l+ vi+e+d + + Pw L + +  + +e++fF++++ k+ +gkr++r +   g+W+ +    d e
  ONIVA07G11020.1   8 LPPGVRFDPADDELVSRYLLRRLRKQPIPLHGVIHEADPLGAPPWMLLADHGRGGDEVFFFAEARPKNVKGKRQKRtVEGGGFWQGQRVcvDGE 101
                      79****************************99***************877777889********************555599**9665423444 PP

              NAM  92 vlsk.....kgel........vglkktLvfykgrapkgektdWvmheyrl 128
                       ls      +            + k +L f+ ++ ++g ++ Wvmhey++
  ONIVA07G11020.1 102 RLSVpggdgG--GevgggleiEWRKYMLSFF-AEGERG-SSGWVMHEYAI 147
                      4443566651..0445666647777888899.455554.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-295166IPR003441NAC domain
PROSITE profilePS5100527.8798166IPR003441NAC domain
PfamPF023651.0E-159146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MAAAGDGLPP GVRFDPADDE LVSRYLLRRL RKQPIPLHGV IHEADPLGAP PWMLLADHGR  60
GGDEVFFFAE ARPKNVKGKR QKRTVEGGGF WQGQRVCVDG ERLSVPGGDG GGEVGGGLEI  120
EWRKYMLSFF AEGERGSSGW VMHEYAITAP DDLASSPIRL YRVRFSGHGK KRKREPERLG  180
ARVHDDDVDG GQRAAPRRAV AETALFVQPS AVDCAESAGQ SFSGAIEPVF HDLPDMMPEQ  240
ADAGDTTETT AAVVNLTDAM SEQPVLPLAA DGDDQSSYGA IDPAFCEQAD AGEAETTVSA  300
AVVNQNYSMA LCDFNFPEVL SYVDFTAGME PSWQQRWPPM SESAPFEQQE PPLAPVAMVD  360
LSPGNADCAD HQSCSGVIDP AFRDLPDMTV LPPEQADTGG GAETTTAMVS LTDKLKYSSS  420
MDGEAAQAWC DFDFPESTDE ALSYIDFTAG AHTDNDGGVS ETAMFEQLGS PPQHDPLPMD  480
ADGADQSSSG PLIDTVFRDH AEPIVLPLEQ ADTGGGAAAA VNLMDKQKYS SSMDGEAVPA  540
WCDSDFPESI DEVLSYIDVS TDDTSCIDFS MDDLFDLAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056410.0AP005641.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0027N13.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645973.10.0uncharacterized protein LOC107275504
TrEMBLA0A0E0I0340.0A0A0E0I034_ORYNI; Uncharacterized protein
STRINGONIVA07G11020.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15243914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.24e-12NAC domain containing protein 47