PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA07G09980.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 206aa MW: 21304.4 Da PI: 9.5899

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA07G09980.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	34.5	6.1e-11	23	156	4	127
NAM 4 Gfr..FhPtdeelvveyLkkkvegkkleleev..ikev.diykvePwdLpk.....kvkaeekewyfFskrdkkyat.gkrknratksgy.... 82 Gfr F P+d++l+++ L++k+++ +++ + +++v d++ + P +L + +++ + wyfF r ++ a +k + ra+ g ONIVA07G09980.1 23 GFRipFLPSDSDLLDCLLRPKIASGRVDSRFAplVHDVaDVFALPPGQLAAthapaPGAGGAEAWYFFGARPRARAGsKKAAARAVGGGGggkr 116 6665599****************96553322599999******843444322236779*9999887525666777663322234 PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 W + k+v++ + g + + + + a+ + +Wvm ey ONIVA07G09980.1 117 WCSVCA-KKVVD-G---GGYCQRFRYKERMASGVVAPRWVMVEYG 156 887766.55555.2...47888999998888888899*****6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	19.758	22	177	IPR003441	NAC domain
Pfam	PF02365	2.5E-8	25	156	IPR003441	NAC domain
SuperFamily	SSF101941	7.59E-21	27	177	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MTAAAATATA TGMAPLADPA VEGFRIPFLP SDSDLLDCLL RPKIASGRVD SRFAPLVHDV 60 ADVFALPPGQ LAATHAPAPG AGGAEAWYFF GARPRARAGS KKAAARAVGG GGGGKRWCSV 120 CAKKVVDGGG YCQRFRYKER MASGVVAPRW VMVEYGVAEE PGVEGVAELV LCKIFRSPEP 180 SPRSESGSPS SASPSCSGGR KRKVAE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012615	0.0	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006658578.1	3e-52	PREDICTED: NAC domain-containing protein 72-like
TrEMBL	A0A0E0HZM3	1e-143	A0A0E0HZM3_ORYNI; Uncharacterized protein
STRING	ONIVA07G09980.1	1e-144	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15395	10	17