PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G05400.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 676aa    MW: 74044.9 Da    PI: 6.0271
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G05400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-14483529455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h   ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  ONIVA07G05400.1 483 NHVLKERRRREKLNEKFKILRSLVPFM-----TKMDKASILGDTIEYVKQLR 529
                      79999*********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-467200IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.492479528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-19480546IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.19E-16483533No hitNo description
Gene3DG3DSA:4.10.280.102.5E-18483541IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-12483528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-16485534IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0010214Biological Processseed coat development
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MAGGEAQAAL QAVAQSLRWT YSLLWQLCPH QGSSLVWGEG HYNGAVKTRK STVMQPPPAE  60
EEDDADHAAR HRSRQLRELY DWLQQAGENS SGGVQTSSTT ASRRPGAALS PEDLTETEWF  120
FLMSASYSFP PGIGLPGRAF ARRGHVWLTG ANEVDSKVFL RAILAKTVVC IPVVDGVLEI  180
GTTEKVEEDM GLIQYARGIF MDQHGIHMKP TLSQHSTSNP VTHCTHQHPI QVQMQLGITS  240
QTKFDYSDEL NADEENDDTE EEGMSGSDTN NTDTERNSGQ LQLQMQDQLN MVSNDHQTMP  300
NNAVSSELMQ CEMSEVVRDG CSNNILEDEI QMLMDCQNSN CQLNLQGPDE PCHSWHFLCE  360
ELQNDYQPAT EDQVASPENT HYPKTLMTIL HYNTLRQQEM NIKNYLPVSE KSSFSRWTTP  420
EGSDDNKTMI SPGTTQRMLK SILMIVPSSH CSYRGAETPE SRGGKGASGT RKVGAIQGDF  480
SANHVLKERR RREKLNEKFK ILRSLVPFMT KMDKASILGD TIEYVKQLRN RIQELESSSS  540
SSRAAARAPS AAAAGRRRKR SAAAATATAA EGMSSSNGRN GGEAAEVVQV SIIESDALLE  600
LRCGCGGGGG GGGVVLLRVM QAMQELQLEV TAVQASCAGG ELLAELRAKV KGRRRSSIAQ  660
VKRAIHLVLS SSSISP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-19720010192Transcription factor MYC3
4rqw_B3e-19720010192Transcription factor MYC3
4rs9_A3e-19720010192Transcription factor MYC3
4yz6_A3e-19720010192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1487492ERRRRE
2488493RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2475030.0AB247503.1 Oryza sativa Indica Group Rc mRNA for Myc-like proanthocyanidin regulatory protein, complete cds, cultivar: Kasalath.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646360.20.0LOW QUALITY PROTEIN: basic helix-loop-helix protein A-like
TrEMBLA0A0E0HXY50.0A0A0E0HXY5_ORYNI; Uncharacterized protein
STRINGONIVA07G05400.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.16e-63bHLH family protein