PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA07G05400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 676aa MW: 74044.9 Da PI: 6.0271 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.1 | 1.8e-14 | 483 | 529 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ ONIVA07G05400.1 483 NHVLKERRRREKLNEKFKILRSLVPFM-----TKMDKASILGDTIEYVKQLR 529 79999*********************8.....8*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.2E-46 | 7 | 200 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.492 | 479 | 528 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.02E-19 | 480 | 546 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.19E-16 | 483 | 533 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-18 | 483 | 541 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.0E-12 | 483 | 528 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-16 | 485 | 534 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MAGGEAQAAL QAVAQSLRWT YSLLWQLCPH QGSSLVWGEG HYNGAVKTRK STVMQPPPAE 60 EEDDADHAAR HRSRQLRELY DWLQQAGENS SGGVQTSSTT ASRRPGAALS PEDLTETEWF 120 FLMSASYSFP PGIGLPGRAF ARRGHVWLTG ANEVDSKVFL RAILAKTVVC IPVVDGVLEI 180 GTTEKVEEDM GLIQYARGIF MDQHGIHMKP TLSQHSTSNP VTHCTHQHPI QVQMQLGITS 240 QTKFDYSDEL NADEENDDTE EEGMSGSDTN NTDTERNSGQ LQLQMQDQLN MVSNDHQTMP 300 NNAVSSELMQ CEMSEVVRDG CSNNILEDEI QMLMDCQNSN CQLNLQGPDE PCHSWHFLCE 360 ELQNDYQPAT EDQVASPENT HYPKTLMTIL HYNTLRQQEM NIKNYLPVSE KSSFSRWTTP 420 EGSDDNKTMI SPGTTQRMLK SILMIVPSSH CSYRGAETPE SRGGKGASGT RKVGAIQGDF 480 SANHVLKERR RREKLNEKFK ILRSLVPFMT KMDKASILGD TIEYVKQLRN RIQELESSSS 540 SSRAAARAPS AAAAGRRRKR SAAAATATAA EGMSSSNGRN GGEAAEVVQV SIIESDALLE 600 LRCGCGGGGG GGGVVLLRVM QAMQELQLEV TAVQASCAGG ELLAELRAKV KGRRRSSIAQ 660 VKRAIHLVLS SSSISP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 3e-19 | 7 | 200 | 10 | 192 | Transcription factor MYC3 |
4rqw_B | 3e-19 | 7 | 200 | 10 | 192 | Transcription factor MYC3 |
4rs9_A | 3e-19 | 7 | 200 | 10 | 192 | Transcription factor MYC3 |
4yz6_A | 3e-19 | 7 | 200 | 10 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 487 | 492 | ERRRRE |
2 | 488 | 493 | RRRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB247503 | 0.0 | AB247503.1 Oryza sativa Indica Group Rc mRNA for Myc-like proanthocyanidin regulatory protein, complete cds, cultivar: Kasalath. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646360.2 | 0.0 | LOW QUALITY PROTEIN: basic helix-loop-helix protein A-like | ||||
TrEMBL | A0A0E0HXY5 | 0.0 | A0A0E0HXY5_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA07G05400.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8863 | 30 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 6e-63 | bHLH family protein |