PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G05030.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 252aa    MW: 27377.3 Da    PI: 8.4929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G05030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-11134181455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  ONIVA07G05030.1 134 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQSLQ 181
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.94E-11128185No hitNo description
SuperFamilySSF474592.36E-18128198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.355130180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-19130198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-9134181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDPVPSLAAE LWRPHHHRHH LEASSVVTDQ GSGSRGGGGS GRRRPRRDAG PEDDDSSKVV  60
STSAASGGGQ DSVAPEAKRL KPMKSSDKND SLRTEAGTDS GNSSKAADKN ATPPEPPKQD  120
YIHVRARRGQ ATDSHSLAER ARREKISERM KILQDLVPGC NKVIGKASVL DEIINYIQSL  180
QHQVEFLSMK LEAVNSHMNN GIVAFPSKDF GAQPYNTAAG LTFDPQTTRE FAQGSTSEWL  240
HMQIGNAYER VT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2426450.0AK242645.1 Oryza sativa Japonica Group cDNA, clone: J090025G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645823.11e-163transcription factor BHLH094-like
SwissprotQ69WS31e-164BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A0E0HXT90.0A0A0E0HXT9_ORYNI; Uncharacterized protein
STRINGONIVA07G05030.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-70BIG PETAL P