PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA07G04020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 293aa MW: 31029.1 Da PI: 6.8039 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26 | 1.7e-08 | 143 | 187 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L++l+P+ K + a++L + +Y+k L ONIVA07G04020.1 143 HSIAERLRRERIAERMRALQDLVPNT-----NKTDRAAMLDEILDYVKFL 187 99***********************7.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.97E-15 | 136 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.33E-10 | 136 | 192 | No hit | No description |
PROSITE profile | PS50888 | 15.796 | 138 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-14 | 140 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.0E-6 | 143 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.5E-10 | 144 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MAGQQPPTGG AEDDFFDHFF SIPSAAAAGA GGVGGLGSGD HHPFPLALSL DAEGAGAARR 60 LLDGGHDGGR TDRDPVQLAG LFAPVFGAAA GVQPPHLRAP PPPQVFHAQP KPGEGAMAAP 120 QPQQPPAPRP KVRARRGQAT DPHSIAERLR RERIAERMRA LQDLVPNTNK TDRAAMLDEI 180 LDYVKFLRLQ VKVLSMSRLG GAGAVAQLVA DIPISVKGEA SDSGSKQQIW EKWSTDGTEK 240 QVAKLMEEDI GAAMQFLQSK ALCMMPISLA MAIYDTQHSQ DGHSVKPEPN TPS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 152 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096075 | 0.0 | FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644607.1 | 0.0 | transcription factor UNE12 | ||||
Swissprot | O22768 | 6e-79 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A0E0DS08 | 0.0 | A0A0E0DS08_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0HXG2 | 0.0 | A0A0E0HXG2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2YIT4 | 0.0 | A2YIT4_ORYSI; Uncharacterized protein | ||||
STRING | OMERI05G15010.1 | 0.0 | (Oryza meridionalis) | ||||
STRING | ONIVA07G04020.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2656 | 35 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 5e-55 | bHLH family protein |
Publications ? help Back to Top | |||
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