PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G01330.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 435aa    MW: 46088 Da    PI: 9.2761
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G01330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.37.9e-40601992132
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.........eaesssss 81 
                       g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai++l+++     ++ +as++                 
  ONIVA07G01330.1  60 SGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKLPSLdtasfPTHPASSAavaaaaappL------- 146
                      689*************************************************************77666222222222221112222....... PP

              TCP  82 asnsssg.......kaaksaakskksqksaasalnlak.esrakarararertrekmri 132
                            +       ++ +++ +s+ s++s+ s+l+l++ esr kar+rarer++   + 
  ONIVA07G01330.1 147 ------PhaereqqQQLTKSGCSSTSETSKGSVLSLSRsESRVKARERARERSSAAAAA 199
                      ......0222223356777779999**************************99877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.8E-4061195IPR005333Transcription factor, TCP
PROSITE profilePS5136932.18962120IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.408179196IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MELAGSNNKR GRVRGPNDDD DDAGEPDAKR HHHQLLLPWP QQQQQQQHPA SRIYRVSRAS  60
GGKDRHSKVY TAKGIRDRRV RLSVSTAIQF YDLQDRLGYD QPSKAIEWLI KAAAAAIDKL  120
PSLDTASFPT HPASSAAVAA AAAPPLPHAE REQQQQLTKS GCSSTSETSK GSVLSLSRSE  180
SRVKARERAR ERSSAAAAAA SKDAGDDAAT PTAPTAAPAS SQAASFTELL TGMAAANASP  240
ADHKQQQAWQ PMTVAAATAD YIGFAAAAAP HTQPRKSAAG HHSAMPHTFA SPAPHLANIT  300
PIAMAPAQHF TLTPAAAEHH AEMTHYSFDH FMPVHAAAAA AAAASTPAGG DYNLNFSMSS  360
GLVGVHSRGT LQSNSQSHLS SHHHHHHQQQ QQQQQLQRLS APLDAPNIPF LFSPAAAPTA  420
ADTQFAAALQ LWDGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-3167121155Putative transcription factor PCF6
5zkt_B3e-3167121155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037040.0AP003704.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1048_C10.
GenBankAP0061630.0AP006163.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1364A02.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644886.10.0transcription factor PCF6
TrEMBLA0A0E0HWH50.0A0A0E0HWH5_ORYNI; Uncharacterized protein
STRINGONIVA07G01330.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-36TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2