PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G31120.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 448aa    MW: 49155.2 Da    PI: 4.9832
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G31120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-1662106147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE++++++a k++G   W+ I +++g ++t+ q++s+ qk+
  ONIVA06G31120.1  62 REKWTEEEHDKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 106
                      789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-1656110IPR009057Homeodomain-like
PROSITE profilePS5129421.58557111IPR017930Myb domain
TIGRFAMsTIGR015574.2E-1660109IPR006447Myb domain, plants
SMARTSM007172.9E-1461109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-1062102IPR009057Homeodomain-like
PfamPF002491.7E-1462105IPR001005SANT/Myb domain
CDDcd001673.40E-1164107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MPQLEEKDSS DLAINKGPSL DLVKSPLMMN DASATVTAMQ PNEGMEEFPV KVRKPYTITK  60
QREKWTEEEH DKFLEALKLY GRSWRQIQEH IGTKTAVQIR SHAQKFFSKV VREPGSNNAI  120
EIPPPRPKRK PLHPYPRKCA NSGSDANPAT AQLKLAPGSS SSGSDQENGS PISVLSAMQS  180
DAFGSSVSNP STRCTSPASS DDGNNIPTFT SGEDNNVPCE PTVIDPSQSH KEIDQDRKDV  240
NNMSEEDSSE EEVQETSLKL FGRTVVIPDP RKRSSSDPKH ESEEQISQPS NEEMLQASSS  300
VGEIPAAYCA PNGWFMSYNS FPFQFGESAA DARIPPLHVW WPYYGFAPIS HPRGLSTVMQ  360
QTEGSDESDG GKSHSSESSS DSGENVQMTA PQSSRIVESL GAIYVRDSGS SFELKPSANS  420
AFVRVKPSNS GDEEVIRGFV PYKRCKFQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8295230.0CT829523.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644385.10.0protein REVEILLE 1 isoform X1
TrEMBLA0A0E0HVU10.0A0A0E0HVU1_ORYNI; Uncharacterized protein
TrEMBLB8B2Y40.0B8B2Y4_ORYSI; Uncharacterized protein
STRINGONIVA06G31120.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.12e-38MYB_related family protein