PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G30950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 292aa MW: 32961.4 Da PI: 8.208 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.8 | 1.2e-45 | 20 | 151 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk....rknratksgyWkatgkdke 91 pGfrFhPt+eel+ +yLk+ v+gkkl++ ++i++v++y+++P++Lp ++ +e+ewyfF++rd+k+atg r++r+t++g+Wkatg+d++ ONIVA06G30950.1 20 LPGFRFHPTEEELLEFYLKQVVQGKKLKF-DIIPTVHLYRHDPRELPGLARIGEREWYFFVPRDRKQATGGggggRPSRTTERGFWKATGSDRA 112 59**************************9.99***************8778899**************7555556******************* PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ ++l+glkktLv+y+grap+g+ktdWvm+eyrl ONIVA06G30950.1 113 IRCAadPKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 151 **98777788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-52 | 17 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.203 | 19 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-24 | 21 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MEQQRSRSTA AGGEVEVEQL PGFRFHPTEE ELLEFYLKQV VQGKKLKFDI IPTVHLYRHD 60 PRELPGLARI GEREWYFFVP RDRKQATGGG GGGRPSRTTE RGFWKATGSD RAIRCAADPK 120 RLIGLKKTLV YYEGRAPRGT KTDWVMNEYR LPDAAAIPDT MQLQMQHDDM VLCKVYRKAV 180 SLKELEQRVA MEELARSTTS SGTHNTGSPL QQDSSSISIS SSSDAMKKEV VGVDEASAAA 240 HELVRPATLS LPQLEVARPQ SGLEWMQEPF LTQLRSPWME TWSPYYASVL NF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-45 | 13 | 178 | 9 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. | |||
GenBank | CU406703 | 0.0 | CU406703.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C111K18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643570.1 | 0.0 | NAC domain-containing protein 22-like | ||||
Swissprot | Q10S65 | 1e-102 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A0E0HVR4 | 0.0 | A0A0E0HVR4_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0Q2U6 | 0.0 | A0A0E0Q2U6_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2YH56 | 0.0 | A2YH56_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1Q5F6 | 0.0 | I1Q5F6_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q5Z7Q4 | 0.0 | Q5Z7Q4_ORYSJ; Os06g0726300 protein | ||||
STRING | ORUFI06G29930.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS06T0726300-00 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA06G30950.1 | 0.0 | (Oryza nivara) | ||||
STRING | ORGLA06G0236900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1770 | 38 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 7e-79 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
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