PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G30800.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 345aa MW: 37762.7 Da PI: 4.4694

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G30800.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.3	2e-11	155	197	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L ONIVA06G30800.1 155 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 197 79*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.269	148	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-16	152	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-12	154	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-9	155	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-15	155	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.84E-5	161	202	No hit	No description
CDD	cd04873	5.33E-4	273	301	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MELDEQAFLE ELFSLRRDAW EYNAMGDFFS PACAAMDGFQ ERHQSTTTVS VLPTFTASYE 60 QPPPAPAAGF DCLSEVYGNA AAAFGPNAGG EYGGGGDMGF LDVVEPKASM VVDGGGLGVC 120 KVEPGLQAEG GFSAAAAAPA SKKKRVEGMP SKNLMAERRR RKRLNDRLSM LRSVVPKISK 180 MDRTSILGDT IDYMKELLER IRQLQEEIEE QQQQETPGVL SVFRELNPNE MLARNTPKVA 240 ASIHCWIYNE EDDGINGVCE VQFDVERKEG GDTRVEIYCA AKPGLLLSTV STLETLGLDI 300 QQCVVSCFND FGMHASCSEM QRERMSADMI KQELFKNAGY GGGCL

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MELDEQAFLE ELFSLRRDAW EYNAMGDFFS PACAAMDGFQ ERHQSTTTVS VLPTFTASYE  60
QPPPAPAAGF DCLSEVYGNA AAAFGPNAGG EYGGGGDMGF LDVVEPKASM VVDGGGLGVC  120
KVEPGLQAEG GFSAAAAAPA SKKKRVEGMP SKNLMAERRR RKRLNDRLSM LRSVVPKISK  180
MDRTSILGDT IDYMKELLER IRQLQEEIEE QQQQETPGVL SVFRELNPNE MLARNTPKVA  240
ASIHCWIYNE EDDGINGVCE VQFDVERKEG GDTRVEIYCA AKPGLLLSTV STLETLGLDI  300
QQCVVSCFND FGMHASCSEM QRERMSADMI KQELFKNAGY GGGCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	162	KKRVEGMPSKNLMAERRRRKR
2	156	163	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063523	0.0	AK063523.1 Oryza sativa Japonica Group cDNA clone:001-116-H12, full insert sequence.
GenBank	AP003685	0.0	AP003685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0548E04.
GenBank	AP007231	0.0	AP007231.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0535F09.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643717.1	0.0	transcription factor bHLH93
Swissprot	Q9LSL1	8e-65	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A0E0HVP7	0.0	A0A0E0HVP7_ORYNI; Uncharacterized protein
STRING	ONIVA06G30800.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1302	37	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	6e-45	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]