PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G29160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 527aa MW: 56172.1 Da PI: 9.4419 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.6 | 5.7e-41 | 232 | 308 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC++dls+a+eyhr+hkvCe+hskap+v+vsgle+rfCqqCsrfh l efD++k+sCrrrL++hn+rrrk+q+ ONIVA06G29160.1 232 CQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQ 308 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.6E-33 | 224 | 293 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.496 | 229 | 306 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-38 | 231 | 311 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.9E-31 | 232 | 305 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MANRWLLAGR STSRGGSHPL GLTLLLLLPP PLVTVQSQAL RLTAAVEILN SAMASFGMNW 60 NQKSPVFWDW ENPAPFGPNT MENPKSIPHP EPRGVVVAAA NHGSTNSSGG TFTSSSELAN 120 GSSKSSLSAS FDSSSKLGNS LEFRFASVKG HGKNMCKDGE AGRVEDSGTS PAVAVSHGEP 180 VIGLKLGKRT YFENVCGGQN VKSSSAASGV TCPSTVVKKV KVSQQSTQSS YCQVEGCKVD 240 LSSAREYHRK HKVCEAHSKA PKVIVSGLER RFCQQCSRFH GLAEFDQKKK SCRRRLSDHN 300 ARRRKPQQEA ISFGSSRLAT MFYDARQQTD IYFGQSPFGQ VRSNAISSCD NLGGFKFTEA 360 KLPWMKPMKT IGLEDLNFST LQMPGNVVSH TVHHHDFDGL IPFKGNTTKV LNQGVDPACA 420 VVSSNSNGAP DLRRALSLLS SDSWGPADVQ AGSQVHPGGV MPPLAVAAAT VTAPTNPVSV 480 MHALHPSTGG GGFWQDGDDP PPLDHASQAQ AFMHPGNGSS SGYGHLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-28 | 232 | 305 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 287 | 304 | KKKSCRRRLSDHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073179 | 0.0 | AK073179.1 Oryza sativa Japonica Group cDNA clone:J033004F21, full insert sequence. | |||
GenBank | AK102136 | 0.0 | AK102136.1 Oryza sativa Japonica Group cDNA clone:J033085H14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643448.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643450.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643451.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643452.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643454.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643455.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643456.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643457.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643458.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643459.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643461.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_025882366.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_025882367.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Swissprot | A2YGR5 | 0.0 | SPL12_ORYSI; Squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A0E0HV11 | 0.0 | A0A0E0HV11_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G29160.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3697 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 2e-47 | squamosa promoter binding protein-like 2 |