PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G26670.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 373aa    MW: 40000.6 Da    PI: 7.0412
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G26670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.5e-073103432154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  ONIVA06G26670.1 310 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 343
                      569*****************************87 PP
2ELK29.12.3e-10264285122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+++L+++++E++
  ONIVA06G26670.1 264 ELKHELKQGYREKLVDIREEIL 285
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-1995139IPR005540KNOX1
PfamPF037901.9E-1698135IPR005540KNOX1
SMARTSM012561.1E-25153208IPR005541KNOX2
PfamPF037918.4E-17161207IPR005541KNOX2
SMARTSM011880.0014264285IPR005539ELK domain
PfamPF037893.5E-6264285IPR005539ELK domain
PROSITE profilePS5121310.196264284IPR005539ELK domain
PROSITE profilePS5007111.596284347IPR001356Homeobox domain
SMARTSM003893.3E-10286351IPR001356Homeobox domain
SuperFamilySSF466891.15E-15286350IPR009057Homeodomain-like
CDDcd000867.42E-11287348No hitNo description
Gene3DG3DSA:1.10.10.603.1E-24291348IPR009057Homeodomain-like
PfamPF059204.3E-18304343IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MTQVRGASRL IPSLPPNCYN HKSSSSSSSS SSSSSSTSRA AAAAAAAVRV MAFHYQDHAL  60
AMDAAAAAAE TGGHHHPGFV GAGGVVGVGG GGGWEREKAA IAAHPLYERL LEAHVACLRV  120
ATPVDQLPRI DAQIAARPPP LAAATAAAAA AAAGGAPSGG EELDLFMTHY VLLLCSFKEQ  180
LQQHVRVHAM EAVMACWELE QTLQSLTGAS PGEGSGATMS DDEDNQVDSE SNMFDGNDGS  240
DGMGFGPLML TEGERSLVER VRQELKHELK QGYREKLVDI REEILRKRRA GKLPGDTAST  300
LKAWWQAHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ RKRNWHSNPA SSSSDKSKRK  360
RSNAGDGKAE QSW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340360RKRNWHSNPASSSSDKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2414380.0AK241438.1 Oryza sativa Japonica Group cDNA, clone: J065162G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644389.10.0homeobox protein knotted-1-like 11 isoform X1
SwissprotQ94LW40.0KNOSB_ORYSJ; Homeobox protein knotted-1-like 11
TrEMBLA0A0E0HU540.0A0A0E0HU54_ORYNI; Uncharacterized protein
STRINGONIVA06G26670.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-139KNOTTED1-like homeobox gene 3