PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G24230.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 644aa    MW: 71659.7 Da    PI: 6.7057
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G24230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.5e-18211258148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT++Ed++l ++v+ +G g+W+++ r  g++R++k+c++rw ++l
  ONIVA06G24230.1 211 KGPWTPDEDKRLREYVEAHGEGNWNRVQRNAGLNRCGKSCRLRWANHL 258
                      79******************************************9986 PP
2Myb_DNA-binding41.82.5e-13264307146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+e +++++  lG++ W++ a+ ++ gRt++++k++w++
  ONIVA06G24230.1 264 KGPFSKEEEEMIIKLHLWLGNK-WAKMANSLP-GRTDNEIKNFWNT 307
                      79********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.639206262IPR017930Myb domain
SuperFamilySSF466894.12E-30208305IPR009057Homeodomain-like
SMARTSM007175.2E-16210260IPR001005SANT/Myb domain
PfamPF002495.9E-17211258IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-24212265IPR009057Homeodomain-like
CDDcd001676.95E-12213258No hitNo description
PROSITE profilePS5129416.24263313IPR017930Myb domain
SMARTSM007171.9E-12263311IPR001005SANT/Myb domain
PfamPF002495.4E-12264307IPR001005SANT/Myb domain
CDDcd001671.90E-9266307No hitNo description
Gene3DG3DSA:1.10.10.601.2E-23266311IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MQPDSTDRLA GRHAGCSERA ADLHRTKQMI IFRKFTTKSK KHSMQSCKPR LHRWIVLNPN  60
GKPSPYTLTF QFPSRTPTLA RTPREARCKD LTHTVSIHRM PSRIQFRHPS TTLLRSPPPP  120
PPPPPTSSRR RMRMEGSSPM EEEEEAARLA GSQGESPAML HPNGDGDGDG GDDEGDASGG  180
EEEQGGVARA GVRRRGGGGR VRVRGRIPLK KGPWTPDEDK RLREYVEAHG EGNWNRVQRN  240
AGLNRCGKSC RLRWANHLKP DLKKGPFSKE EEEMIIKLHL WLGNKWAKMA NSLPGRTDNE  300
IKNFWNTRCK RIQRTGEPLY PKEFNHFKLT DLEVMNCESP DESRAKKRTN EVLQGNGQSY  360
KEVFFDNLDY SRPENYIRPN CVTPNSLPVD ATSPFGSAIA TQDQSVPFGS AIVSGHPILD  420
GNFSTSGTIQ RPMNVELPSL QYPNYDFNNN NAWSYHDPLG HPIDQVDFGS LRSEYLSPNN  480
NGLLDALVHG GHGQGELANS QGSFDACFPR VQCNQVIQSN AFSLSSSFPI IGDDLLENSC  540
HAFVGINNNA SSLFLDSQPP PLVDPTFWRH DVSLEPNLPV YCQFNEELPP SNEQFAKDAD  600
DAFGHGGLSD ETNLAAAGQG DEHDLENPWA SMPGACDIPD FPSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-272093115106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2120750.0AB212075.1 Oryza sativa Japonica Group mRNA for GAMYB-like1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641123.10.0transcription factor MYB101
TrEMBLA0A0E0HT970.0A0A0E0HT97_ORYNI; Uncharacterized protein
STRINGONIVA06G24230.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129022331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.13e-54myb domain protein 101