PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G22830.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 525aa    MW: 54739.2 Da    PI: 7.7262
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G22830.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.63e-15341387554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + ErrRR+r+N++f++Lr llP +   p+ K +Ka+iL  ++eY+ +L
  ONIVA06G22830.2 341 HMISERRRRERLNDSFQTLRALLPLP---PDSKKDKAAILASTTEYMDKL 387
                      8899**********************...*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.923336387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-18337407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.31E-15338387No hitNo description
Gene3DG3DSA:4.10.280.102.9E-17340406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-13341387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-14342393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MDAIFALPPD ARARAMGRAA ARLPGCLYLC LWAPAAAIAG GVQPNHLFCL DAWIGGGGGV  60
GAGGGGGDRA LELFEAYRGA LCAAVSGCVP GWAYKEGAAC MELTEHDLAA SASLQVQQQF  120
YHETGTKMAV FMGCDSGEIE VGLSAASATA TAAVVGEMQQ SILEELIQMP PPPPSPSSSS  180
LLSLSVGSPE YSSLVRSMAT SVGASAAADP SPVHGGLLAP VYGEFPGSDD DAAMAQAMLA  240
VISTPAPPPP PWRPPRRRAR SSSSPRRATA FKAYNAALSP RARPRPGAPG QRMIKTGISL  300
LASVHMQTRS RELAAARQRD THAAPPPPPP PPPPSSSQLH HMISERRRRE RLNDSFQTLR  360
ALLPLPPDSK KDKAAILAST TEYMDKLISQ VSELGEKNRQ LEAQLAARSG EAQWPAASGG  420
GGGESSSERV QVDVVIAGSS ASTDQPREVS IRVTVRAECD VSELVVAVLA RLREMGRFAV  480
VSVDAGRRSS SFAQASLTLR IMAGDVCDET SLKEAVAKAV DGAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254260PRRRARS
2344349ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054600.0AP005460.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0610D01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882299.10.0putative transcription factor bHLH041
TrEMBLA0A0E0HSS70.0A0A0E0HSS7_ORYNI; Uncharacterized protein
STRINGOS06T0570900-000.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-22bHLH family protein