PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G22540.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 347aa    MW: 38087.6 Da    PI: 4.9346
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G22540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind99.33.5e-31431352102
                      HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                      Fl k++e++ed++++ ++sw  +  nsfvv+d++ fa ++Lp +Fkh nf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+++ll
  ONIVA06G22540.1  43 FLVKTFEMVEDPATDAVVSWGgAARNSFVVWDPHAFAARLLPLHFKHANFSSFLRQLNTYGFRKVSADR---------WEFANEDFLGGQRHLL 127
                      9********************9899******************************************99.........**************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  95 ekikrkks 102
                       +i+r+++
  ONIVA06G22540.1 128 ANIRRRRR 135
                      *****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.2E-5139133IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.26E-3040133IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.4E-3340133IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.0E-2743133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-164366IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-168294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-1695107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDYSTVKQEV VEVVVLDGEE EGEAAAPVPL PAAMGVVAAV APFLVKTFEM VEDPATDAVV  60
SWGGAARNSF VVWDPHAFAA RLLPLHFKHA NFSSFLRQLN TYGFRKVSAD RWEFANEDFL  120
GGQRHLLANI RRRRRGAGTG STTPRTVNGG AGGSEGEVER LRRDKEALAR ELARLRRQQQ  180
EARAQLLDME RRVRGTERRQ EQCTAFLARA LRSPDVLDNI ARRHAAAVER KKRRMLAAAA  240
DDDGLTFEAL ALAAAADTSH STGGAVTTDM IWYELLGEEQ AEIDIEVDQL VASASAAADT  300
ASEAEPWEEM GEEEVQELVQ QIDCLASPRS SDGLIRSTPS ISQRKSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A3e-21401337110Heat shock factor protein 1
5hdn_A3e-21401337110Heat shock factor protein 1
5hdn_B3e-21401337110Heat shock factor protein 1
5hdn_C3e-21401337110Heat shock factor protein 1
5hdn_D3e-21401337110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054560.0AP005456.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0513E02.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881831.11e-165putative heat stress transcription factor A-6a
RefseqXP_025881832.11e-165putative heat stress transcription factor A-6a
RefseqXP_025881833.11e-165putative heat stress transcription factor A-6a
SwissprotQ5Z6A41e-166HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLA0A0E0HSP30.0A0A0E0HSP3_ORYNI; Uncharacterized protein
STRINGONIVA06G22540.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-48heat shock transcription factor A2