PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G22200.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 510aa    MW: 56156.3 Da    PI: 9.6897
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G22200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.41e-30542311128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 
                      lp+G++F+Ptd+el+ e+L++kv+          ++++   i+   +i++++P++Lp  v+++  + +fF++ +k+y+tg+rk+r+        
  ONIVA06G22200.1  54 LPAGVKFDPTDQELI-EHLEAKVRPGGeaaahplIDEFIPtIEGEdGICYTHPEKLP-GVSKDGLSRHFFHRPSKAYTTGTRKRRKiqppaaaa 145
                      799************.99*****988856665543333333766646**********.556667799******************88******* PP

              NAM  78 ..................................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                                         ++ +W++tgk+++v+  +g++ g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  ONIVA06G22200.1 146 ssgggggnasssssasaaaavarhghqqqqqqqqRSETRWHKTGKTRAVVG-GGRQRGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 231
                      *****************************9998755789***********9.99************5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-3548138IPR003441NAC domain
PROSITE profilePS5100526.18654250IPR003441NAC domain
PfamPF023651.0E-1455231IPR003441NAC domain
SuperFamilySSF1019413.53E-35185250IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MDGVVAEDQA GGGGGGHRRL IGSRIEEHRK YMSEESCCPR CGHKIDRKLD WVGLPAGVKF  60
DPTDQELIEH LEAKVRPGGE AAAHPLIDEF IPTIEGEDGI CYTHPEKLPG VSKDGLSRHF  120
FHRPSKAYTT GTRKRRKIQP PAAAASSGGG GGNASSSSSA SAAAAVARHG HQQQQQQQQR  180
SETRWHKTGK TRAVVGGGRQ RGCKKILVLY TNFGKHRKPE KTNWVMHQYH LGEAEEERDG  240
ELVVSKIFYQ TQPRQCAAAD AAATASASAV DRRTTSGRDR AAAPMASANV SVAAFHGGAA  300
GFDEFSFAQF RSSFEEAGMG ASSSDHQSAM VDQRRQQQQH DDDEHDHRRG GGGHHYVGQQ  360
QSVAATFHVV SSPADPIARL MSPPPAHQGT VMLRQPEPPY IYHHQEDERP HQPRKFDGRS  420
TSGSGLEEVI MGCTSRRSKG GETSGGKDGT EWQYPSFWPS DSQDHHGWKF HLSAQIYMSK  480
ETKMILKQSK RERQKKKKER KNKGDITRKI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1491497ERQKKKK
2492498RQKKKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641895.10.0NAC domain-containing protein 75 isoform X2
TrEMBLA0A0E0HSJ20.0A0A0E0HSJ2_ORYNI; Uncharacterized protein
STRINGONIVA06G22200.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-101NAC domain containing protein 75