PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G21600.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 365aa    MW: 39113 Da    PI: 10.0455
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G21600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind90.22.6e-28121382102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT..................... CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks..................... 74 
                      F+ k+y+++ed+ ++ +i w + +nsfvv d+  f++++Lp +Fkh+nf+SFvRQLn+Y    + ++ ++s++                     
  ONIVA06G21600.1  12 FVWKTYRMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYVSLVTPSSISSSHHtpplsalhimlpwilsgtqlk 105
                      9**********************************************************766555555554448999****9999999998887 PP

                      .....XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
     HSF_DNA-bind  75 .....kekiweFkhksFkkgkkellekikrkks 102
                           +++ weF+h sF +g+++ll++i r+ s
  ONIVA06G21600.1 106 gfrkvDPDRWEFAHASFLRGQTHLLRNIVRRGS 138
                      7765449***********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.0E-408136IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.71E-289136IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.0E-349136IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-111235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.8E-2512136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-115062IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-116375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAAAAGGGAA PFVWKTYRMV EDPGTDGVIG WGKGNNSFVV ADPFVFSQTL LPAHFKHNNF  60
SSFVRQLNTY VSLVTPSSIS SSHHTPPLSA LHIMLPWILS GTQLKGFRKV DPDRWEFAHA  120
SFLRGQTHLL RNIVRRGSAA AGGGGGGGGG GKRRDATADG GGGGGEEDMT MVATEVVRLK  180
QEQRTIDDRV AAMWRRVQET ERRPKQMLAF LLKVVGDRDK LHRLVGGGGN GAAATAAAAV  240
VDNNGFADAA RVGCGEKRAR LLLDGDNTGA FGPDAVDFAG LYTGADMFPD VAVDAAAGYN  300
LTVNLVKEFF DIFLQIRSNN TIQSEGVDNI NRWRWTNNGM PVQSRHTTQF NGRVDSVAAK  360
QISKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-18413620129Heat shock factor protein 1
5d5v_B6e-18413620129Heat shock factor protein 1
5d5v_D6e-18413620129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036820.0AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641665.11e-130heat stress transcription factor C-2b
SwissprotQ0DBL61e-131HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLA0A0E0HSA50.0A0A0E0HSA5_ORYNI; Uncharacterized protein
STRINGONIVA06G21600.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-48heat shock transcription factor C1