PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G20460.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 376aa    MW: 41391.7 Da    PI: 7.1011
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G20460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.72e-52101391128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+   ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+
  ONIVA06G20460.1  10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKA 102
                      69****************************.9***************943444442456*********************************** PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ ++   +g++ktLvfy grap+g+ktdW+mheyrl
  ONIVA06G20460.1 103 IFLANACRIGMRKTLVFYVGRAPHGKKTDWIMHEYRL 139
                      ***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-595159IPR003441NAC domain
PROSITE profilePS5100557.15410159IPR003441NAC domain
PfamPF023651.1E-2711139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MHPSGGALSV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLANACR IGMRKTLVFY  120
VGRAPHGKKT DWIMHEYRLD QDNVDVQEDG WVVCRVFMKK SYQRGLNPAD MAAVDDDDLL  180
HHHHHPFPPA QLHGGAADHK HDGAGGYHHH HLTQPHHHYD DFPSFDPSMQ LPQLMSADQP  240
PPPPPSLLPG VPPSAAAALS SLDVECPQNL MKLTSAAAGG GATGLLHAGG DHRFATAATD  300
WSILDKLLAS HQNLDQLFQG RVIAGASSPA AMAAPSHHQH LMDQLAGGGG AAASSLQRLP  360
LQYLGCEAAD LLRFSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-50816115167NO APICAL MERISTEM PROTEIN
1ut4_B3e-50816115167NO APICAL MERISTEM PROTEIN
1ut7_A3e-50816115167NO APICAL MERISTEM PROTEIN
1ut7_B3e-50816115167NO APICAL MERISTEM PROTEIN
3swm_A4e-50816118170NAC domain-containing protein 19
3swm_B4e-50816118170NAC domain-containing protein 19
3swm_C4e-50816118170NAC domain-containing protein 19
3swm_D4e-50816118170NAC domain-containing protein 19
3swp_A4e-50816118170NAC domain-containing protein 19
3swp_B4e-50816118170NAC domain-containing protein 19
3swp_C4e-50816118170NAC domain-containing protein 19
3swp_D4e-50816118170NAC domain-containing protein 19
4dul_A3e-50816115167NAC domain-containing protein 19
4dul_B3e-50816115167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281860.0AB028186.1 Oryza sativa mRNA for OsNAC7 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644283.10.0NAC domain-containing protein 76
SwissprotQ5Z6B61e-146NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLA0A0E0HRX10.0A0A0E0HRX1_ORYNI; Uncharacterized protein
STRINGONIVA06G20460.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.32e-87NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]