PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G19160.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 190aa    MW: 20346.1 Da    PI: 11.1214
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G19160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.91.5e-192066349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     i+ k +rqvtfskRr g++KKA+E+S+L +a +a++ fs+ g+++ +
  ONIVA06G19160.1 20 IDGKEKRQVTFSKRRRGLFKKASEISTLSGASIAIVSFSKAGNVFAF 66
                     78899**************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.79E-221080IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.7961070IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-221069IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-151232IPR002100Transcription factor, MADS-box
PfamPF003192.1E-192066IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-153247IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-154768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGRPRGGTSK GKQKIEMCCI DGKEKRQVTF SKRRRGLFKK ASEISTLSGA SIAIVSFSKA  60
GNVFAFGSPS VDAVLRRHVV AGPSTSTSHA HAGGDVFADD GGDNPEVLNA LKRATDEAAA  120
EVAAEDARQS GVEGKITEAM AAGRRRFWWD AANVEALGEA ELPVFERALH KLRGAVVRRR  180
RRLAAARRSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039510.0AP003951.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1288_C01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642715.11e-134agamous-like MADS-box protein AGL61
TrEMBLA0A0E0HRF71e-132A0A0E0HRF7_ORYNI; Uncharacterized protein
TrEMBLA3BC491e-132A3BC49_ORYSJ; Os06g0504451 protein
TrEMBLQ654X21e-132Q654X2_ORYSJ; Uncharacterized protein OJ1288_C01.16
STRINGONIVA06G19160.11e-133(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2047878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-23AGAMOUS-like 62