PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G18720.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 294aa    MW: 30880.2 Da    PI: 5.4958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G18720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.2e-08199245455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + + + + RR+ri +++  L+el+P+      +K++ +++L +A+ Y+k +q
  ONIVA06G18720.1 199 TQSSAAKSRRERISERLRALQELVPSG-----GKVDMVTMLDRAISYVKFMQ 245
                      56677899*****************98.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.81E-11193249No hitNo description
Gene3DG3DSA:4.10.280.103.4E-12193253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-13194255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.526195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5199245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-9201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAMVAGDEAM SVPWHDVGVV VDPEAAGTAP FDAGAGYVPP YGQCQYYYYY DDHHHHPCST  60
ELIHAGDAGS AVAVAYDGVD GWVHAAAAAT SPSSSSALTF DGHGAEEHSA VSWMDMDMDA  120
HGAAPPLIGY GPTAATSSPS SCFSSGGSGD SGMVMVTTTT PRSAAASGSQ KRARPPPSPL  180
QGSELHEYSK KQRANNKETQ SSAAKSRRER ISERLRALQE LVPSGGKVDM VTMLDRAISY  240
VKFMQMQLRV LETDAFWPAS DGATPDISRV KDALDAIILS SSSPSQKASP PRSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8362780.0CT836278.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642667.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
TrEMBLA0A0E0HRA30.0A0A0E0HRA3_ORYNI; Uncharacterized protein
STRINGONIVA06G18720.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1880188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.19e-36ROOT HAIR DEFECTIVE6