PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G16260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ZF-HD | ||||||||
Protein Properties | Length: 214aa MW: 22092.8 Da PI: 6.4241 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 49.1 | 1.4e-15 | 61 | 111 | 4 | 53 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFH 53 ++Y+eC kNhAaslGgh + + g e +++++l CaACgCH nFH ONIVA06G16260.1 61 TVYQECPKNHAASLGGHGAGRLRGVHAVVGGEpADPTSLMCAACGCHCNFH 111 78****************999999999888888****************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 6.8E-12 | 61 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-8 | 61 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 14.625 | 63 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MKLSTFATAA AAAADRSRGG GGKHGVRAAS CVGATGGVIA GDMAEVELLR RAQPAVGGGE 60 TVYQECPKNH AASLGGHGAG RLRGVHAVVG GEPADPTSLM CAACGCHCNF HCWLLEGSPP 120 PPPPLALPGP PMPANVLHGQ LHREEETPEV RLPRVDGDES DNNSDGSEYY DERSVSPPSP 180 PHLPAPVVHQ PYYPSAQHML LSLGSSGQAQ RLPL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610599.1 | 5e-28 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q6ER21 | 5e-29 | ZHD9_ORYSJ; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A0E0HQC8 | 1e-152 | A0A0E0HQC8_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G16260.1 | 1e-152 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP21657 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 7e-10 | zinc finger homeodomain 1 |