PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G11650.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 453aa    MW: 48440 Da    PI: 4.8326
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G11650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.46e-081859338
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     +r C+ + + +++++C  ++ +lC+ C ++ H+       H+
  ONIVA06G11650.1 18 ARACDGCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHE 59
                     678*****************************6567777776 PP
2CCT67.34.2e-23396439144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  ONIVA06G11650.1 396 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 439
                      9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6231663IPR000315B-box-type zinc finger
SMARTSM003363.9E-111663IPR000315B-box-type zinc finger
PfamPF006431.2E-61860IPR000315B-box-type zinc finger
CDDcd000218.38E-91963No hitNo description
PfamPF062037.7E-18396438IPR010402CCT domain
PROSITE profilePS5101716.083396438IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSSTAKAAAA GAVGAKSARA CDGCLRRRAR WYCAADDAFL CQGCDTSVHS ANPLARRHER  60
LRLRPSSPPP LVPPSGSGRR DEAVPAAWFK RKARTPRSHA AKSAAAVGQL LSRRLVVVPE  120
AAAGSGGDSP EERKDEGEIV EEQEQLLYRV PIFDPALSEF CSPPPLEDAA AAVSCCNEDG  180
AVENPTKPSM TTTTATTPPL QFFPDGQANF GPTDAELREF AADMEALLGR GLDDGNDEDS  240
FCMETLGLIE PVDDDAGRVK VEADGDAGMT LAWCHELDTE TSSGEMLDID FDCGSPQAAT  300
TPDEKVGSSG PAAAAAAADD DDAQLQQSNL ALSLNYEAII ESWGTSPWTD GERPHVKLDD  360
SWPRDYSGVW MAAAGVFGHG GEEQALTPRL GMDGGREARV SRYREKRRTR LFSKKIRYEV  420
RKLNAEKRPR MKGRFVKRAA AAATAAVATA CVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406422RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2412490.0AK241249.1 Oryza sativa Japonica Group cDNA, clone: J065129J23, full insert sequence.
GenBankAK2878360.0AK287836.1 Oryza sativa Japonica Group cDNA, clone: J065191O19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641417.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A0E0HNQ40.0A0A0E0HNQ4_ORYNI; Uncharacterized protein
STRINGONIVA06G11650.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-59B-box type zinc finger protein with CCT domain