PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA06G09450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 948aa MW: 106903 Da PI: 7.8005 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 87.4 | 1.2e-27 | 825 | 875 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek +++e +s+yF++pi++AA+eL+v+lT+LK++CR++GI+RWPhRk+ksl ONIVA06G09450.1 825 EKALTFELVSQYFYMPITQAARELNVGLTLLKKKCRELGIPRWPHRKMKSL 875 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.10 | 1.1E-11 | 38 | 313 | IPR011990 | Tetratricopeptide-like helical domain |
SuperFamily | SSF48452 | 5.69E-5 | 44 | 401 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS51375 | 8.681 | 66 | 100 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.56 | 68 | 94 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF12854 | 1.7E-9 | 129 | 158 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 12.748 | 131 | 165 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 2.1E-7 | 133 | 161 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 2.6E-4 | 165 | 191 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 6.6E-5 | 165 | 192 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 5.974 | 166 | 192 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 8.133 | 193 | 228 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.0067 | 196 | 217 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 8.966 | 229 | 263 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 2.5E-4 | 232 | 256 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 7.5E-5 | 232 | 256 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 10.567 | 274 | 308 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 1.9E-4 | 276 | 305 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 9.2E-5 | 276 | 306 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 1.3E-7 | 307 | 333 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 8.2E-5 | 307 | 332 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 6.73 | 309 | 335 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 10.709 | 336 | 370 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 2.4E-5 | 338 | 367 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 4.1E-4 | 338 | 367 | IPR002885 | Pentatricopeptide repeat |
Gene3D | G3DSA:1.25.40.10 | 1.1E-11 | 365 | 397 | IPR011990 | Tetratricopeptide-like helical domain |
Pfam | PF13041 | 2.8E-9 | 368 | 414 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 1.3E-5 | 369 | 402 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 8.068 | 371 | 401 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 5.086 | 402 | 432 | IPR002885 | Pentatricopeptide repeat |
Gene3D | G3DSA:1.25.40.10 | 3.4E-6 | 433 | 498 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS51375 | 8.594 | 436 | 466 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.0075 | 441 | 466 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 4.3E-11 | 467 | 515 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 12.255 | 468 | 502 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 6.1E-7 | 470 | 503 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 7.487 | 503 | 533 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 0.0016 | 505 | 537 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 7.059 | 539 | 569 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.56 | 543 | 567 | IPR002885 | Pentatricopeptide repeat |
Gene3D | G3DSA:1.25.40.10 | 3.4E-6 | 602 | 626 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS51375 | 6.511 | 605 | 639 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51519 | 18.974 | 811 | 895 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.9E-21 | 828 | 875 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0016554 | Biological Process | cytidine to uridine editing | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 948 aa Download sequence Send to blast |
MRTRPPPVPA AAHRRATATA AGAAPAPAPA AADDLVMRHN RSLAALLRAG RYGAARRLFD 60 ALPARSVVTW NSLLAGLARR PDARAAREFF DAMPVRDAVS WNTLLAAYSA SPHPDHLAAA 120 RRLFDEMPQR DVVTWNTLLG AYARRGLMDE ARRLFDEMPQ RNAASWNTMV TGFFAAGQVV 180 KALDVFDAMP AKDSASLSTM VSGFTKNGML HEAEELLTKR LSVTDMDKAV DAYNTLIVAY 240 GQAGRFSDAK RLFDMIPKGQ YQHNMLKRKG FERNVVSWNS MMICYIKAGD VCSARALFNE 300 MPDKDLVSWN TMISGYTQAS DMKEAEKLFW EMPDPDTVSW NLIIQGFMQK GEAEHARGFF 360 DRMPERGTIS WNTMISGYEK NGNYISSVKL FSKMLEVGEI PDRHTFSSVL AACASIPMLG 420 LGAQIHQLVE KSFVPDTAIS NALITMYSRC GALNDAEAIF KQMHTKKDLV SWNALIGCYE 480 HHGRATKALQ LFKEMRRAKV MPTHITFVSL LSACVNAGLV SEGRMVFDTM VHEYGIVARI 540 EHYAALVNLI GRHGQLDDAL EVINSMPMAP DRSVWGAFLG ACTAKKNEPL AQMAAKELST 600 INPDSSAPYV LIHNLHAHEG KWGSAAVVRE EMERQGVYKQ PGYSWIDLEG KMHVFISGDT 660 WHPNAQEIFS VLEDWQWHNP MSLEMNQLTQ VKLIAKRNNQ YIFSGCSPLK SLSKEWSPAK 720 NIASWWPYCT SLWPDSYLLE EEALFSSLSF PSFHPQPVYS TVMQSNVLQD ELGVIFEDDV 780 LKYWDEMEQS ENKVEKSEKG LPLLYYGDEN GAASKIMRDD VRSEEKALTF ELVSQYFYMP 840 ITQAARELNV GLTLLKKKCR ELGIPRWPHR KMKSLQTLIN NVQVLQEASK ANNEEQLRML 900 VEMLQEERRL LEQKPYVQLE EKTKRLRQAC FKANYKKRRL LALEAGEP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5i9d_A | 8e-60 | 26 | 637 | 2 | 421 | pentatricopeptide repeat protein dPPR-U8A2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP003509 | 0.0 | AP003509.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0525F01. | |||
GenBank | AP003569 | 0.0 | AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882382.1 | 0.0 | pentatricopeptide repeat-containing protein At1g62260, mitochondrial isoform X1 | ||||
TrEMBL | A0A0E0HMZ9 | 0.0 | A0A0E0HMZ9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G09450.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10899 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G18790.1 | 5e-35 | RWP-RK domain-containing protein |