PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G09300.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 87aa    MW: 9746.99 Da    PI: 9.335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G09300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.6e-0815541554
                     HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     +iN+ +++L++llP++ + ++   s    L++++ YIksL
  ONIVA06G09300.1 15 EINELISKLQSLLPSSRRRGANQASTTKLLKETCSYIKSL 54
                     7**************7567777799999***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.055154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-101477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-91469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-51554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSSRRSSRSS VSEEEINELI SKLQSLLPSS RRRGANQAST TKLLKETCSY IKSLHREVDD  60
LSDRLSDLMA GMDHNSPGAE IIRSLLR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of brassinsteroid (BR) response. Controls lamina inclination by participating in two BR signaling pathways involving BRI1 and RGA1 (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of brassinsteroid (BR) response. Controls lamina inclination by participating in two BR signaling pathways involving BRI1 and RGA1. {ECO:0000269|PubMed:19648232}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinolide. Repressed by abscisic acid (ABA). {ECO:0000269|PubMed:19648232}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0716011e-146AK071601.1 Oryza sativa Japonica Group cDNA clone:J023102C01, full insert sequence.
GenBankCT8322841e-146CT832284.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA029F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642646.18e-55transcription factor ILI4
SwissprotA2YAW87e-56ILI4_ORYSI; Transcription factor ILI4
SwissprotQ0DDF67e-56ILI4_ORYSJ; Transcription factor ILI4
TrEMBLA0A0E0DZC42e-53A0A0E0DZC4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0HMY42e-53A0A0E0HMY4_ORYNI; Uncharacterized protein
TrEMBLA0A0E0L9K52e-53A0A0E0L9K5_ORYPU; Uncharacterized protein
TrEMBLI1Q0V02e-53I1Q0V0_ORYGL; Uncharacterized protein
STRINGOS06T0226500-013e-54(Oryza sativa)
STRINGONIVA06G09300.13e-54(Oryza nivara)
STRINGOPUNC06G07810.13e-54(Oryza punctata)
STRINGORGLA06G0076300.13e-54(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.14e-27bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sui P, et al.
    H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice.
    Plant J., 2012. 70(2): p. 340-7
    [PMID:22136623]