PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G09080.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 355aa    MW: 39524.3 Da    PI: 4.3962
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G09080.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.71.2e-26958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien  nrqvtfskRrng++KKA+ELSvLCd+++a+++fs++g+l  +s
  ONIVA06G09080.2  9 KRIENIQNRQVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSGRLSHFS 58
                     79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.6E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.072161IPR002100Transcription factor, MADS-box
CDDcd002658.16E-36278No hitNo description
SuperFamilySSF554551.83E-28278IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-25323IPR002100Transcription factor, MADS-box
PfamPF003199.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGRVKLQIKR IENIQNRQVT FSKRRNGLIK KAYELSVLCD IDIALLMFSP SGRLSHFSGR  60
RRIEDVLTRY INLPESDRGG YYLINMLTQL KCESDVTEDL TNTSSKAPVN SNIEELQQEI  120
RRCQHQMQLT EEQLRMFEPD PARSASMEDV EASEKFIAGI LSRVEERKRH LLCSMGSFDV  180
TASTSAMQHL YLPQQHQHGD ITDNGFGSDE VASWVSEGMP PTTSSVASIF AGTSDSMMSF  240
RDQAVYDTMR QDACVDQTVV PEMGMCHVDQ QNQSDDWQAY TSAEFLNALI PPTPFPLDDE  300
DTMGPMLASS PLLMPGIHDQ QPPEEDMATA GCSQAPANDG NGLYAAEDIA PVNVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-17175174Myocyte-specific enhancer factor 2B
1tqe_Q5e-17175174Myocyte-specific enhancer factor 2B
1tqe_R5e-17175174Myocyte-specific enhancer factor 2B
1tqe_S5e-17175174Myocyte-specific enhancer factor 2B
6bz1_A5e-17175174MEF2 CHIMERA
6bz1_B5e-17175174MEF2 CHIMERA
6bz1_C5e-17175174MEF2 CHIMERA
6bz1_D5e-17175174MEF2 CHIMERA
6c9l_A5e-17175174Myocyte-specific enhancer factor 2B
6c9l_B5e-17175174Myocyte-specific enhancer factor 2B
6c9l_C5e-17175174Myocyte-specific enhancer factor 2B
6c9l_D5e-17175174Myocyte-specific enhancer factor 2B
6c9l_E5e-17175174Myocyte-specific enhancer factor 2B
6c9l_F5e-17175174Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117760.0AK111776.1 Oryza sativa Japonica Group cDNA clone:J023075K19, full insert sequence.
GenBankFN6631300.0FN663130.1 Oryza sativa Japonica Group mRNA for MADS63 protein, cultivar Nipponbare.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641968.20.0agamous-like MADS-box protein AGL66
TrEMBLA0A0E0HMV70.0A0A0E0HMV7_ORYNI; Uncharacterized protein
STRINGONIVA06G09080.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-71AGAMOUS-like 66