PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G07790.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 500aa    MW: 53296.3 Da    PI: 8.6867
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G07790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.84.5e-2486129144
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                      d+epgrCrRtDGKkWRCsr++++ +k+CE+H+hrg++rsrk++e
  ONIVA06G07790.1  86 DPEPGRCRRTDGKKWRCSREAYGESKYCEKHMHRGKNRSRKPVE 129
                      79***************************************997 PP
2WRC24.54.7e-083103292544
              WRC  25 kklCErHlhrgrsrsrkske 44 
                      +k+CE+H+hrg++rsrk++e
  ONIVA06G07790.1 310 SKYCEKHMHRGKNRSRKPVE 329
                      79***************997 PP
3QLQ61.72e-211044236
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                      FTa+Q+q+L++Q+l+yKy+aa++PvPp+Ll++++
  ONIVA06G07790.1 10 LFTATQWQELEHQALIYKYMAAGAPVPPDLLLHLR 44
                     5******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.4E-10945IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.0391045IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.7E-151143IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.71486130IPR014977WRC domain
PfamPF088793.0E-1987129IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MAGGGSGRCL FTATQWQELE HQALIYKYMA AGAPVPPDLL LHLRHRAAAA AAADVDTVPS  60
LAFPPHHLGW GCYGAAAAQY GRRVEDPEPG RCRRTDGKKW RCSREAYGES KYCEKHMHRG  120
KNRSRKPVEM PPPAAAAVYR PSALSISPPP HDADAPSYGA GAGAPLQLHL DSFHASTSPP  180
PSYHITPLFP VSGGYGWSSS KEHCLTLGGV ADLSLNKPAD HHHHDATSAT TTEKPLRDDG  240
RTLWDSTQLS ISIPTAAASS PDLAIASAAS RYHNNVTHGA VGQSGQDAWR RLTSRMGSPN  300
GLGGRRRPLS KYCEKHMHRG KNRSRKPVEM PPPAAAAVYR PSALSISPPP HDADAPSYGA  360
GAGAPLQLHL DSFHASTSPP PSYHRYAHTS SAPLFPSSAA GYGGGWSLSK EHCLTLGGAA  420
ADLSLDKPAD HHHDATSATT EKPLRRFFDE WPRSDDGRTP WDGTQLSISI PTAVAASPDL  480
AIAGAASRYH SNGDHLRTSE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8361980.0CT836198.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA059E01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641768.11e-160growth-regulating factor 2
SwissprotQ6AWY71e-161GRF2_ORYSJ; Growth-regulating factor 2
TrEMBLA0A0E0HMF40.0A0A0E0HMF4_ORYNI; Uncharacterized protein
STRINGONIVA06G07790.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139922527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-40growth-regulating factor 5