PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G06960.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 477aa MW: 50628.6 Da PI: 4.9153 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.3 | 1e-11 | 326 | 371 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L++l+P++ K +Ka++L + ++Y+k Lq ONIVA06G06960.4 326 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 371 99***********************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.93E-13 | 319 | 375 | No hit | No description |
SuperFamily | SSF47459 | 3.93E-17 | 319 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.25 | 321 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.6E-17 | 323 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-9 | 326 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-14 | 327 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT 60 MLANGCLPYN TQAHPLSGQI LPKGELPNNL LDLQQLQNSS NLRSNSIPPG VLQCNSSGTF 120 DAKLDTPGLA ELPHALSSSI DSNGSDISAF LADVHAVSSA PTLCSAFQNV SSFMEPVNLD 180 AFGFQGAQNV AMLNKTSLPN GNPSLFDNAA IASLHDSKEF LNGGSIPSFG TVLQALGAGG 240 LKAAQQEQNI RNIPLPTFTS GSHLAVTDAQ GPPLPSKIPP LIHDHNSEYP INHSSDVEPQ 300 ANSAPGNSAN AKPRTRARRG QATDPHSIAE RLRREKISER MKNLQDLVPN SNKADKASML 360 DEIIDYVKFL QLQVKVLSMS RLGAPGAVLP LLRESQTECH SNPSLSASTI SQGPPDMPDS 420 EDSSAFEQEV VKLMETSITS AMQYLQNKGL CLMPIALASA ISNQKGMAAA AAIPPEK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT832907 | 0.0 | CT832907.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA242A24, full insert sequence. | |||
GenBank | CT832908 | 0.0 | CT832908.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244I16, full insert sequence. | |||
GenBank | CT832909 | 0.0 | CT832909.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI213M20, full insert sequence. | |||
GenBank | CT832910 | 0.0 | CT832910.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236P22, full insert sequence. | |||
GenBank | CT832911 | 0.0 | CT832911.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI245F02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644031.1 | 0.0 | transcription factor SPATULA isoform X1 | ||||
Refseq | XP_025882097.1 | 0.0 | transcription factor SPATULA isoform X1 | ||||
TrEMBL | A0A0E0HM30 | 0.0 | A0A0E0HM30_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G06960.3 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58010.1 | 6e-57 | LJRHL1-like 3 |