PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G06960.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 401aa    MW: 42799 Da    PI: 5.3987
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G06960.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.1e-12250295555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  ONIVA06G06960.2 250 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 295
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.26E-13243299No hitNo description
SuperFamilySSF474593.01E-17243305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.25245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-17247304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-9250295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-14251300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT  60
MLANGCLPYN TQAHPLSGQI LPKAPTLCSA FQNVSSFMEP VNLDAFGFQG AQNVAMLNKT  120
SLPNGNPSLF DNAAIASLHD SKEFLNGGSI PSFGTVLQAL GAGGLKAAQQ EQNIRNIPLP  180
TFTSGSHLAV TDAQGPPLPS KIPPLIHDHN SEYPINHSSD VEPQANSAPG NSANAKPRTR  240
ARRGQATDPH SIAERLRREK ISERMKNLQD LVPNSNKADK ASMLDEIIDY VKFLQLQVKV  300
LSMSRLGAPG AVLPLLRESQ TECHSNPSLS ASTISQGPPD MPDSEDSSAF EQEVVKLMET  360
SITSAMQYLQ NKGLCLMPIA LASAISNQKG MAAAAAIPPE K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0621270.0AK062127.1 Oryza sativa Japonica Group cDNA clone:001-045-D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644035.10.0transcription factor bHLH82 isoform X2
TrEMBLA0A0E0HM280.0A0A0E0HM28_ORYNI; Uncharacterized protein
STRINGONIVA06G06960.30.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.19e-58LJRHL1-like 3