PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G06960.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 444aa    MW: 47259.8 Da    PI: 5.1027
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G06960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.3e-12293338555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  ONIVA06G06960.1 293 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 338
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.19E-13286342No hitNo description
SuperFamilySSF474593.53E-17286348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.25288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-17290347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-9293338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-14294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT  60
MLANGCLPYN TQAHPLSGQI LPKGELPNNL LDLQQLQNSS NLRSNSIPPG VLQCNSSGTF  120
DAKLDTPGLA ELPHALSSSI DSNVNLDAFG FQGAQNVAML NKTSLPNGNP SLFDNAAIAS  180
LHDSKEFLNG GSIPSFGTVL QALGAGGLKA AQQEQNIRNI PLPTFTSGSH LAVTDAQGPP  240
LPSKIPPLIH DHNSEYPINH SSDVEPQANS APGNSANAKP RTRARRGQAT DPHSIAERLR  300
REKISERMKN LQDLVPNSNK ADKASMLDEI IDYVKFLQLQ VKVLSMSRLG APGAVLPLLR  360
ESQTECHSNP SLSASTISQG PPDMPDSEDS SAFEQEVVKL METSITSAMQ YLQNKGLCLM  420
PIALASAISN QKGMAAAAAI PPEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8329070.0CT832907.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA242A24, full insert sequence.
GenBankCT8329080.0CT832908.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244I16, full insert sequence.
GenBankCT8329090.0CT832909.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI213M20, full insert sequence.
GenBankCT8329100.0CT832910.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236P22, full insert sequence.
GenBankCT8329110.0CT832911.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI245F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644031.10.0transcription factor SPATULA isoform X1
RefseqXP_025882097.10.0transcription factor SPATULA isoform X1
TrEMBLA0A0E0HM270.0A0A0E0HM27_ORYNI; Uncharacterized protein
STRINGONIVA06G06960.30.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.14e-57LJRHL1-like 3