PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G04700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 232aa MW: 27394.9 Da PI: 5.638 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 84.4 | 1.1e-26 | 113 | 163 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++++e +s+yF lpik+AA+eL+v+lT+LKr+CR +GI+RWPhRk+ksl ONIVA06G04700.1 113 EKTLTFELVSQYFCLPIKQAAQELNVGLTLLKRRCRVLGIPRWPHRKVKSL 163 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.405 | 95 | 184 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.8E-22 | 115 | 163 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEKWRFYGGH QFQSYSFHEE ENLFQDWSLD YLLLGEDEPF FTHHFSTSVH SNFVQDELYT 60 LFDGDILSIW GDMKEDAYHR SDKDGGEKEE KLDHEKAMEL QLQRLPSGRQ SGEKTLTFEL 120 VSQYFCLPIK QAAQELNVGL TLLKRRCRVL GIPRWPHRKV KSLETLIKNV QELGMETGQD 180 EDNTRNAVEM LQQTKKLIEQ SPDAKLDDWT KMLRQACFKE NYKRRRLLAI EG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 222 | 226 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627113.1 | 1e-173 | protein RKD1 | ||||
Refseq | XP_015627115.1 | 1e-173 | protein RKD1 | ||||
Swissprot | Q9M9U9 | 9e-41 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | A0A0D9YY63 | 1e-172 | A0A0D9YY63_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0HLA4 | 1e-172 | A0A0E0HLA4_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NKW9 | 1e-172 | A0A0E0NKW9_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2X9K2 | 1e-172 | A2X9K2_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1P480 | 1e-172 | I1P480_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM02G32960.1 | 1e-173 | (Oryza glumipatula) | ||||
STRING | ORUFI02G34010.1 | 1e-173 | (Oryza rufipogon) | ||||
STRING | ONIVA06G04700.1 | 1e-173 | (Oryza nivara) | ||||
STRING | ORGLA02G0278600.1 | 1e-173 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 4e-43 | RWP-RK domain-containing protein |