PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G04580.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 408aa    MW: 41017.1 Da    PI: 9.8129
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G04580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.72.9e-40642401137
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 
                      aa+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++     
  ONIVA06G04580.1  64 AAPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSAPahlra 157
                      689*******************************************************************999878888888886666688888 PP

              TCP  89 ...............................kaaksaakskksqksaasalnlakesrakarar..are.rtrekmriknkln 137
                                                     ++++s  +   + +s +  l+++ + +a a a   +r+ r++++m+++++++
  ONIVA06G04580.1 158 lpspaaaarfgsradawdrvvslgfpsegpaSSSSSPSPLLLNFHSGSVGLDVQPSPSAAAAAAdlSRKrRWEQEMQQQQQQQ 240
                      99999999999999999999999999999964444444888888888888888885555444444666667777777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.0E-4470240IPR005333Transcription factor, TCP
PROSITE profilePS5136927.86171125IPR017887Transcription factor TCP subgroup
Gene3DG3DSA:2.60.120.102.9E-4231254IPR014710RmlC-like jelly roll fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MDVAGDAGGG RRPNFPLQLL EKKEEQPCSS SAAGGGTGPS SAGGNGNNGS GPGGAGGEMQ  60
LRKAAPKRSS TKDRHTKVEG RGRRIRMPAL CAARVFQLTR ELGHKTDGET IEWLLQQAEP  120
AVIAATGTGT IPANFTSLNI SLRSSGSSLS APAHLRALPS PAAAARFGSR ADAWDRVVSL  180
GFPSEGPASS SSSPSPLLLN FHSGSVGLDV QPSPSAAAAA ADLSRKRRWE QEMQQQQQQQ  240
QQQQQQQQQQ YQQQMAGYTQ SQMPGTVWMV PSNSTQGGGP SGGGGGGGGG SGESIWTFPQ  300
MSSAAAAAAV YRGSVPSGLH FMNFPAPMAL LPGQQLGLGP VGGGGGGGGG GEGHMGILAA  360
LNAYRTQAAT DAAGQQGGGG GGGGSSQQQH GGGGGGGERH QSISTSDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280290SGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057330.0AP005733.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03.
GenBankAP0058480.0AP005848.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624016.10.0transcription factor TCP14
SwissprotQ93Z001e-56TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A0E0HL880.0A0A0E0HL88_ORYNI; Uncharacterized protein
TrEMBLQ6YUX60.0Q6YUX6_ORYSJ; Os02g0747400 protein
STRINGOS02T0747400-010.0(Oryza sativa)
STRINGONIVA06G04580.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-44TCP family protein
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]