PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G04550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 214aa MW: 23243.5 Da PI: 11.778 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 39.6 | 1.9e-12 | 33 | 119 | 16 | 98 |
TCP 16 ggRdRR...vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaaksk 98 g R RR Rls+++ + f+d+qd+LG+ ++sk ieWL+ +a a l + +a + ++s + s+++ + +ka +a ++k ONIVA06G04550.1 33 GVRARRtstARLSVPTSIAFYDIQDRLGVNRPSKSIEWLICAALVARLLLRPPQRRPAPHPrRPSSGRPSEEQARTRKATVAASPRK 119 6677773335*********************************99999998886666633333333333333222221111111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 20.405 | 19 | 82 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.4E-9 | 32 | 75 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MEEVVVGKEC KRPRCALVGV GGHGSDVADE PGGVRARRTS TARLSVPTSI AFYDIQDRLG 60 VNRPSKSIEW LICAALVARL LLRPPQRRPA PHPRRPSSGR PSEEQARTRK ATVAASPRKS 120 GEKRRKTRSG CAAWKAERIT KLRVWREGWM PRREASTSAA SAGQSWIRKL STPGSGDSCS 180 CSDAKPAKRR WAEKAGEVVA REAGGAERGG GGRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619107.1 | 1e-30 | transcription factor PCF8-like | ||||
TrEMBL | A0A0E0HL85 | 1e-146 | A0A0E0HL85_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G04550.1 | 1e-147 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19965 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 7e-11 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |