PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G04530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 88aa MW: 9905.14 Da PI: 9.335 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.9 | 8.9e-09 | 15 | 54 | 15 | 54 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +iN+ +++L++llP++ + +s s L+++++YIksL ONIVA06G04530.1 15 EINELISKLQSLLPNSRRRGSSQASTTKLLKETCNYIKSL 54 7**************77899999****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.258 | 1 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0052 | 10 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.1E-10 | 14 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-10 | 14 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.1E-6 | 15 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MSSRRSSRGS ISEEEINELI SKLQSLLPNS RRRGSSQAST TKLLKETCNY IKSLHREVDD 60 LSDRLSDLMA TMDHNSPGAE IIRSILRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}. | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100305 | 1e-114 | FP100305.1 Phyllostachys edulis cDNA clone: bphyst024b19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624230.1 | 1e-55 | transcription factor ILI5 | ||||
Swissprot | A2X9L8 | 8e-57 | ILI5_ORYSI; Transcription factor ILI5 | ||||
Swissprot | Q6YUX0 | 8e-57 | ILI5_ORYSJ; Transcription factor ILI5 | ||||
TrEMBL | A0A0D3FAG9 | 2e-54 | A0A0D3FAG9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YY80 | 2e-54 | A0A0D9YY80_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0CRH8 | 2e-54 | A0A0E0CRH8_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0HL83 | 2e-54 | A0A0E0HL83_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NKZ0 | 2e-54 | A0A0E0NKZ0_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1P496 | 2e-54 | I1P496_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM02G33100.1 | 4e-55 | (Oryza glumipatula) | ||||
STRING | OMERI02G30310.1 | 4e-55 | (Oryza meridionalis) | ||||
STRING | ORUFI02G34170.1 | 4e-55 | (Oryza rufipogon) | ||||
STRING | OS02T0747900-00 | 4e-55 | (Oryza sativa) | ||||
STRING | ONIVA06G04530.1 | 4e-55 | (Oryza nivara) | ||||
STRING | ORGLA02G0280200.1 | 4e-55 | (Oryza glaberrima) | ||||
STRING | OBART02G32470.1 | 4e-55 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP928 | 38 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26945.1 | 3e-25 | bHLH family protein |