PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G01190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 442aa MW: 49004.8 Da PI: 4.9743 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103.4 | 2e-32 | 51 | 142 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++d++++++isw e g sfv++d++ f++ L+++Fkhsnf+SF+RQLn+YgF+kv+ ++ we++++ F g+k+ll+ ONIVA06G01190.1 51 FLTKVYDMVSDPATDNVISWAEGGGSFVIWDSHAFER-DLHRHFKHSNFTSFIRQLNTYGFRKVHPDR---------WEWANEGFIMGQKHLLK 134 9************************************.8**************************999.........***************** PP XXXXXXXX CS HSF_DNA-bind 96 kikrkkse 103 +ikr+k++ ONIVA06G01190.1 135 TIKRRKKS 142 *****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.3E-33 | 43 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.18E-30 | 47 | 139 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.3E-50 | 47 | 139 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.7E-28 | 51 | 139 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-16 | 51 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-16 | 88 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 89 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-16 | 101 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MGSKKRSPQH PAAAAPPPAV GGGGGGEVSG DGGASTANGP VVPKPSEVAP FLTKVYDMVS 60 DPATDNVISW AEGGGSFVIW DSHAFERDLH RHFKHSNFTS FIRQLNTYGF RKVHPDRWEW 120 ANEGFIMGQK HLLKTIKRRK KSSQEAPSEI QKAPVKTAPG TENIEIGKYG GLEKEVETLK 180 RDKALLMQQL VDLRHYQQTS NLEVQNLIER LQVMEQNQQQ MMALLAIVVQ NPSFLNQLVQ 240 QQQQQRRSNW WSPDGSKKRR FHALEQGPVT DQETSGRGAH IVEYLPPVPE TSGQVNPVEG 300 AICSANSQPV PSPAVATPMD MQTSNVADTL GSSEEPFADN STLHEWDDND MQLLFDDNLD 360 PILPPFENDG QMGPPLSVQD YDFPQLEQDC LMEAQYNSNN PQYVLLYMPD IFPFSSADFF 420 GDQPPGASAP LASRNGVLRV YR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 7e-22 | 32 | 139 | 10 | 129 | Heat shock factor protein 1 |
5d5v_B | 7e-22 | 32 | 139 | 10 | 129 | Heat shock factor protein 1 |
5d5v_D | 7e-22 | 32 | 139 | 10 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 138 | LKTIKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY344490 | 0.0 | AY344490.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF8 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633341.1 | 0.0 | heat stress transcription factor A-9 | ||||
Swissprot | Q10PR4 | 0.0 | HSFA9_ORYSJ; Heat stress transcription factor A-9 | ||||
TrEMBL | A0A0E0HJZ9 | 0.0 | A0A0E0HJZ9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G01190.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11494 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-71 | heat shock factor 3 |
Publications ? help Back to Top | |||
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