PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G00900.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 887aa    MW: 99230.9 Da    PI: 5.0466
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G00900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.23.3e-19701991128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                      lp+G++F+Ptd++l+  +L+++v + +      +  +e+ik+vd      +++P+d+p  ++++    yfF+k+ k+ a++  +++ ++   W+
  ONIVA06G00900.1  70 LPRGVEFNPTDSDLL-WHLAAEVGNGQarrhpfI--NEFIKSVDetigFGYTHPQDIP-GIRQDGCASYFFHKNFKECANE--NSKCIR---WQ 154
                      699************.789999988886776442..233554443333899*******.666777789******9999864..444445...** PP

              NAM  85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      ++g+  +++  +g+l g+k+++v+y  + + ++++ tdW +h+y++
  ONIVA06G00900.1 155 KSGNPISITL-DGNLQGCKEVFVLYayETDGNNPQITDWRLHQYHI 199
                      **********.999**********97767888889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-2562217IPR003441NAC domain
PROSITE profilePS5100521.77570217IPR003441NAC domain
PfamPF023654.1E-871199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MAKDKEVGPP PPPCVDSDHE DLPLAERRRR LLRPPAESKP PAPERREASA AAAAAAEDSG  60
GAAQQGWPGL PRGVEFNPTD SDLLWHLAAE VGNGQARRHP FINEFIKSVD ETIGFGYTHP  120
QDIPGIRQDG CASYFFHKNF KECANENSKC IRWQKSGNPI SITLDGNLQG CKEVFVLYAY  180
ETDGNNPQIT DWRLHQYHIE STEKDEGELV VSKIFYELEK NQFKWAEKSH AQSAQGASAI  240
DDDSKEELQL DNHSFNMITE NSSVQGNENK QKQTQTGTCP NLDKLSYFNV VSNMHIGNQI  300
NDHDEIEELD HMSLQERYRI LMAENHSSSA VVSSEQCAID GLENSCKPGT NGMIPKRIHE  360
GTAFRDGMYS MLQEISSAPA IIGSIDNDNN RRLLTEGLSN NQQSHEAGCE SGFLSTSSSA  420
APPQCQVVCS HDLLVNGKTL IYSRDPSSSS TPTFGDKNIQ LEGTDDRTLL VDVKLEPALE  480
GDFTEKITSS VQRTDPNHGT EGSNLVGSIN SVSSAISKRI SEAARSNPEN SHVEGLLPSS  540
RIKSEVTGSE LPLVVCGLTS ISIAELTAKK TNTLNHDGVL AYCSRKRKRR KTLRDPSEKT  600
LEEDSLRNDE GTAYFSRQRR RRKTATDSIE TALEEDAPGL LQILLDKGIL VKEIKLYGVE  660
EEDDMVPDCT ESDFQDLENV ITKLFPQRTS LLKSALRHEK GEKAIYCLTC LISLIEQSRY  720
LQFRDCPVEW GWCRDLQSFI FIFKSHNRIV LERPEYGYAT YFFEIVKSLP IQWQIQRMVT  780
AMKLSGCGRT ALIENRPLLI GEDLTEGEAR VLEEYGWVPN SGLGTMLNYR DRVVHDRWNE  840
RSGTDWKTKI GKLLMNGYSE GHLVLSHFPT KVGKIEDDTE IKQEDPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1584589RKRKRR
2584590RKRKRRK
3585590KRKRRK
4606619RNDEGTAYFSRQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1052830.0AK105283.1 Oryza sativa Japonica Group cDNA clone:001-116-E01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632079.10.0uncharacterized protein LOC4332096
TrEMBLA0A0E0HJW10.0A0A0E0HJW1_ORYNI; Uncharacterized protein
STRINGONIVA06G00900.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.19e-40NAC domain containing protein 85